Hello, Pranab. >From what you describe, it sounds like you have new sequences that you would like included in our Browser. For several tracks (RefSeq Genes, Other RefSeq, Horse mRNAs, Spliced ESTs, Horse ESTs, Other mRNAs), we get our sequences from Genbank and we regularly update our Genbank content. If your sequences are indeed new sequences and you would like them to be included in Genbank, please visit http://www.ncbi.nlm.nih.gov/genbank/submit/. Once your sequences become a part of Genbank, they will automatically be included in our horse browser.
Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Das, Pranab Sent: Monday, April 30, 2012 2:32 PM To: [email protected] Subject: [Genome] Non-annotated RNA seq Hi My name is Pranab Jyoti Das. I am working as Postdoc Research Associate in Texas A&M University. Recently we have sequenced whole transcriptome of Horse sperm by SOLiD RNA seq platform. We have identified total 19257 sequence tag above average coverage 1. Out of which only 30% tag is annotated as dbEST, mRNA or microRNA with different accession number present in UCSC browser for Equine. We have almost 70% seq tag which has no information in Equine browser. My question is what to do with these sequences and how to get accession number for these seq Tag. Thanks Pranab _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
