Hello, Varun. I recommend using our Table Browser to access the information you're interested in. If you're unfamiliar with the Table Browser, please see the User's Guide at http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html. The following are instructions to get information from the UCSC Genes table:
1. Go to http://genome.ucsc.edu 2. On the blue navigation bar at the top of the screen, click "Tables" 3. Set the following options: Clade: Mammal Genome: Human Assembly: Feb. 2009 (GRCh37/hg19) Group: Genes and Gene Prediction Tracks Track: UCSC Genes Table: knownGene 4. On the "region" line, you can specify a genomic position like "chr21" for all of chromosome 21 or "chr21:33031597-33041570" for only a specific portion of chromosome 21. You can also click the "define regions" button to specify multiple regions. If you have a list of specific identifiers you are interested in, you can click the "paste list" button on the "identifiers" line instead and enter your list of identifiers. 5. On the "output format" line, select "sequence" 6. Click the "get output" button 7. Select "genomic" and click the "submit" button 8. Select the desired options and click the "get sequence" button Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of varun gupta Sent: Monday, May 14, 2012 8:00 AM To: [email protected] Subject: [Genome] UCSC Known Gene database GRCh37/hg19 Hi Thank you guys for all the support and help you have been giving to me. I have a question. I read about UCSC Known Genes database GRCh37/hg19. I need this database to get some transcripts or full sequence of genes i am interested in. It would be really kind of you if you can tell me how I can do this. Where is this database?? Hope to hear from you soon Regards Varun _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
