Hello, I am trying to create a GTF or BED file for the Segmental Duplications using the Table browser with the goal to upload or attach the resulting file to Ensembl. Both the BED and GTF file generated by the Table browser do contain the position of the Segmentale Duplications, so these are shown correctly in Ensembl when uploaded, but the coordinates of the other position in the genome where the duplication can be found (which is crucial information) is missing from both the BED and the GTF file. Maybe I am doing something wrong though. Please advise.
Cheers, Bert -- Bert Overduin, Ph.D. Vertebrate Genomics Team EMBL - European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD United Kingdom http://www.ebi.ac.uk/~bert Ensembl browser: http://www.ensembl.org Mailing lists: http://www.ensembl.org/info/about/contact/mailing.html Blog: http://www.ensembl.info YouTube: http://www.youtube.com/user/EnsemblHelpdesk Facebook: http://www.facebook.com/Ensembl.org Twitter: http://twitter.com/Ensembl _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
