Hi Jian, You can retrieve this information using the Table Browser and filtering by GO accession (for more info on GO see http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0016021). If you are unfamiliar with the Table Browser, please refer to these help pages: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html.
From the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables?), make the following selections: clade: Mammal genome: Human assembly: hg19 group: knownGene track: UCSC Genes table: knownGene filter: click 'create', scroll down and select "go" under Linked Tables. Scroll down, click on "allow filtering using fields in checked tables". Under go.goaPart based filters, set gold does match GO:0016021. Click submit. output format: selected fields from primary and related tables Click submit then select any appropriate fields. Click 'get output'. I hope this helps. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 5/17/2012 9:51 AM, Jian Wang wrote: > Dear UCSC genome browser support: > > I searched your FAQ list and didn't find the answer. Do you > store any annotation (experimental or predicted) on gene product location? I > am trying to gather all of membrane bound genes/proteins. If yes, which > query should I use to pull them out using table browser? If not, do you > happen to know where such information is stored? I searched a few places but > they all seem not to be up to date, a few years old. Thanks much. > > -Jian > > > ******************************************************* > Jian Wang, Ph. D. > Discovery Informatics > Lilly Research Labs, DC 0725 > Eli Lilly and Company > Indianapolis, IN 46285 > T: (317) 655-3496; > Email: [email protected]<mailto:[email protected]> > ******************************************************* > > This email message is for the sole use of the intended recipient(s) and may > contain confidential and privileged information. Any unauthorized review, > use, disclosure or distribution is prohibited. If you are not the intended > recipient, please contact the sender by reply email and destroy all copies of > the original message. > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
