Hi Lin, On hg18, go to the track controls for the SNP130 track (e.g. click on the track name) which is in the Variation and Repeats section. You will see an option near the top labelled:
*Include Chimp state and observed human alleles in name: * (If enabled, chimp allele is displayed first, then '>', then human alleles). Just check that box. If you want to see the raw data, you can get if from the table browser using: Assembly: hg18 group: variation and repeats track: snp130 table: snp130OrthoPt2Pa2Rm2 For info about the table, click the view table schema button. Similar controls and tables are also available for hg19. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 5/20/12 5:51 PM, liu lin wrote: > Dear UCSC Genome Browser Team! > > I just read this thread. I'm trying to get the chimp diff file from chimp > chain and chimp net file as well as Xi. I also encounter some problems while > trying to get the human-chimp divergences. Do you know how can I find out the > SNPs based on the chain and net file? I can only get the hg16 version from > UCSC genome browser. Is there a hg18 version of Chimp Diff? > > Best regards, > Lin > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
