Hello Greg, Thanks for the hint. It has been very useful at least it gives me more hints to keep trying to fix it.
When I try to check the version, going to hgTracks, the browser displays that error: Cannot find correct version of file 'HGStyle.css'; this is due to an installation error Error details: /var/www/ucsc2/rsyncdownloadhtdocs/style/HGStyle-1335332800.css does not exist actually it should be "v266.css" instead of that weird number. It looks like the CGIs don't know which version are they, nor the precompiled ones I've downloaded like you recommended, nor the ones that I build from the kent source. (if I change the name of the .css to the name its trying to find, I end up with the previous error about "cannot find userDb") I will do the installation process again in case I miss something. Thank you! ________________________________ De: Greg Roe [[email protected]] Enviado el: martes, 22 de mayo de 2012 9:13 Para: Francesc Travesa Centrich CC: [email protected] Asunto: Re: [Genome-mirror] hgCentral scheme issue Hi Francesc, To find the version number, go to tgTracks (cgi-bin/hgTracks, the main browser application) in a web browser. The version number will be part of the page title (e.g., Human chr4:95,128,759-95,212,443 - UCSC Genome Browser v266). It sounds like maybe you downloaded just the raw source, html files, etc., but did not "build" the CGIs. You might want to download the precompiled binaries as mentioned here: http://genome.ucsc.edu/admin/mirror.html#step6 Please let us know if you have any additional questions: [email protected]<mailto:[email protected]> - Greg Roe UCSC Genome Bioinformatics Group On 5/21/12 1:26 AM, Francesc Travesa Centrich wrote: Hi Luvina, Thank you for your answer. I recently downloaded the kent source, anyway, I run the scripts of "kentSrcUpdate" and "updateHtml" several times. So I guess I have the latest versions of it. The problem persists. Is there a way to check the version of the cgis? To give more clues: when I look at the error_log of apache I see " cartTablesOk failed on hgcentral.userDb!" (and that brings me to the point that hgcentral has no table of userDb, not in mines and not in the ones I can download from your site). It is the hgGateway which gives the error of "can't find profile backupcentral in hg.conf" and gives that error in the error log. In the ex.hg.conf the backupcentral profile is commented so I guess it is not needed in hg.conf, but if I decomment and I put the same configuration db as hgcentral then hgGateway says: Cannot access cart tables in central (nor backupcentral) database. Please check central and backupcentral settings in the hg.conf file and the databases they specify. The error on the log is still the same: cartTablesOk failed on hgcentral.userDb! Also any other work around is welcome (or any other hint of what I am doing wrong)! Thank you for taking your time and helping me! Francesc ________________________________________ De: Luvina Guruvadoo [[email protected]<mailto:[email protected]>] Enviado el: sábado, 19 de mayo de 2012 3:35 Para: Francesc Travesa Centrich CC: [email protected]<mailto:[email protected]> Asunto: Re: [Genome-mirror] hgCentral scheme issue Hi Francesc, One of our engineers suggests checking your CGI version. The problem may be that your CGIs are out of sync as mentioned in the previous discussion: https://lists.soe.ucsc.edu/pipermail/genome-mirror/2009-December/001509.html. Please contact us again at [email protected]<mailto:[email protected]> if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 5/17/2012 1:44 AM, Francesc Travesa Centrich wrote: Hello, I have an issue similar to the one discussed in this topic: https://lists.soe.ucsc.edu/pipermail/genome-mirror/2009-December/001509.html I got this error: ASH: cartTablesOk failed on hgcentral.userDb! this is expected, because my database hgcentral has no table userDb (nor sessionDb). My issue comes that when I tried to upload this scheme: http://hgdownload.cse.ucsc.edu/admin/hgcentral.sql or equally run the script fetchHgCentral.sh I receive a scheme of the database hgCentral with no table called userDb nor sessionDb. Where can I get the proper .sql file? Or if I am doing something wrong, any hint/help will be appreciated. Thanks in advance! Francesc _______________________________________________ Genome-mirror mailing list [email protected]<mailto:[email protected]> https://lists.soe.ucsc.edu/mailman/listinfo/genome-mirror _______________________________________________ Genome-mirror mailing list [email protected]<mailto:[email protected]> https://lists.soe.ucsc.edu/mailman/listinfo/genome-mirror _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
