Hi Youn, Can you try doing this at the command line and and let me know the result?
wget http://hgwdev.cse.ucsc.edu/~angie/liftOver chmod 775 ./liftOver ./liftOver And if you still have a seg fault, do: gdb ./liftOver run where - Greg Roe UCSC Genome Bioinformatics Group On 6/4/12 1:40 PM, Ju Youn Lee wrote: > Hi, > > > > I try to utilize liftOver tool in linux machine. > > I downloaded liftOver executable file from > http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/. > > I run liftover and got ‘Segmentation fault’ with/without input files. > > Is there something I am missing or wrong ? > > > > Below is the machine type and error.. > > > > $ uname -a > > Linux NAME 2.6.31-23-server #74-Ubuntu SMP Mon Feb 28 22:32:34 UTC 2011 > x86_64 GNU/Linux > > $ gcc -v > > Target: x86_64-linux-gnu > > Configured with: ../src/configure -v --with-pkgversion='Ubuntu > 4.4.1-4ubuntu9' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs > --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --enable-shared > --enable-multiarch --enable-linker-build-id --with-system-zlib > --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix > --with-gxx-include-dir=/usr/include/c++/4.4 --program-suffix=-4.4 > --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc > --disable-werror --with-arch-32=i486 --with-tune=generic > --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu > --target=x86_64-linux-gnu > > Thread model: posix > > gcc version 4.4.1 (Ubuntu 4.4.1-4ubuntu9) > > > > $./liftOver > > Segmentation fault > > > > Thanks! > > Youn > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
