Good Morning Shaun: Thank you for the example GFF3 files. We will need to fix the gff3ToGenePred converter program to recognize GFF3 files that do not have mRNA records under gene records. Our mistaken assumption.
--Hiram Shaun Tyler wrote: > > I'm having issues with gff3ToGenePred using GFF files from NCBI. I've seen > some discussion on this in the archives but no resolution. Initially the > program threw a few errors due to what turned out to be dashes in some of > the source description fields. When this was corrected all that was > generated was an empty file (this was mentioned in the archives). I've run > the corrected version through the Sequence Ontology Project GFF3 validator > and it passes with flying colours. Any suggestions would be appreciated. > > Shaun _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
