Hi,
I used table browser for attempting to link the knownGene ids to the entrez
ids. I was able to submit the query (by search for suggestions on this board).
However I got all 'n/a' in the field of hg19.refLink.locusLinkId (see example
below).
Could anyone point what could go wrong here?
==============
#hg19.knownGene.name hg19.knownGene.chrom
hg19.knownGene.strand hg19.knownGene.txStart
hg19.knownGene.txEnd hg19.knownGene.cdsStart
hg19.knownGene.cdsEnd hg19.knownGene.exonCount
hg19.knownGene.exonStarts hg19.knownGene.exonEnds
hg19.knownGene.proteinID hg19.knownGene.alignID
hg19.kgXref.geneSymbol hg19.kgXref.refseq
hg19.refLink.locusLinkId
uc001aaa.3 chr1 + 11873 14409 11873 11873
3 11873,12612,13220, 12227,12721,14409,
uc001aaa.3 DDX11L1 n/a
uc010nxr.1 chr1 + 11873 14409 11873 11873
3 11873,12645,13220, 12227,12697,14409,
uc010nxr.1 DDX11L1 n/a
uc010nxq.1 chr1 + 11873 14409 12189 13639
3 11873,12594,13402, 12227,12721,14409,
B7ZGX9 uc010nxq.1 DDX11L9
n/a
uc009vis.3 chr1 - 14361 16765 14361 14361
4 14361,14969,15795,16606,
14829,15038,15942,16765, uc009vis.3 WASH7P
n/a
uc009vjc.1 chr1 - 16857 17751 16857 16857
2 16857,17232, 17055,17751,
uc009vjc.1 WASH7P n/a
Thanks,
Jason
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