Hello Stas, You can find the full downloads for those tables here:
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/ In particular you will probably want these files: est.fa.gz - Human ESTs in GenBank. This sequence data is updated once a week via automatic GenBank updates. mrna.fa.gz - Human mRNA from GenBank. This sequence data is updated once a week via automatic GenBank updates. Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 6/6/12 3:39 PM, stas vishnevetsky wrote: > Hello, > > I am using "*all_mrna*" and "*all_est*" tables from the table browser > (group: mRNA and EST Tracks, track: Human mRNAs/Human ESTs). > I wanted to download the mRNA or EST sequence by changing the output format > drop list to "sequence". > I was surprised to get the genomic sequence aligned to those mRNA/EST > sequences. > > *how can I download the mRNA/EST sequence of these tables?* > > I have searched for help in the mailing list and the best i found is this > link that accesses this specific mRNA sequence "AB021262": > <[email protected]> > http://genome.ucsc.edu/cgi-bin/hgc?hgsid=137289627&g=htcDisplayMrna&i=AB021262&c=chr1&l=9830920&r=9892869&o=mrna&table=mrna > > please assist. > Thanks, > Stas Vishnevetsky > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
