Hi Andrea, We only display RefSeq genes that make it through our alignment process. More information about our alignment process can be found on the RefSeq description page here: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=danRer7&g=refGene. <http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=refGene.> I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group
On 6/8/2012 9:55 AM, Dr. Andrea Sboner wrote: > Hello, > > I noticed that the number of RefSeq genes for Zebrafish -- Jul. 2010 > (Zv9/danRer7) is currently 15,803, from the refGene table. > RefSeq Genes (refGene) Summary Statistics > > > item count 15,803 > item bases 391,968,562 (27.80%) > item total 425,791,569 (30.20%) > smallest item 60 > average item 26,944 > biggest item 2,381,874 > block count 138,070 > block bases 28,912,124 (2.05%) > block total 29,774,076 (2.11%) > smallest block 1 > average block 216 > biggest block 8,378 > > > This is quite in contrast with the numbers listed in Ensembl (~32K) and > NCBI/Gene (~34K > http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=alive%5Bprop%5D%20NOT%20newentry%5Btitle%5D%20AND%20txid7955). > > > I am wondering whether you could explain this difference. > > Thank you very much. > > Best regards, > Andrea Sboner > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
