Hi Dr. Munoz-Fuentes, We have a track with the most recent SNPs (build 131 for dog) on our preview browser: http://genome-preview.ucsc.edu/cgi-bin/hgTracks?db=canFam2
Tracks on the preview browser have not yet been tested and are subject to change. In particular, there was a problem with this track with translating mappings for chrUn, so the track is missing the chrUn SNPs. You can still download the remaining SNPs (about 3 million SNPs) from the preview Table Browser: http://genome-preview.ucsc.edu/cgi-bin/hgTables We do not keep them in VCF format. You can see the format of the snp131 table by selecting it in the Table Browser and hitting the "describe table schema" button. If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 6/7/12 2:53 PM, Violeta Muñoz-Fuentes wrote: > Hi, > > I am looking for the most recent dog dbSNP file, hopefully in VCF > format, with CanFam2 coordinates. > > Could you indicate me where to locate it? > > Best regards, > > -- > > Dr Violeta Munoz-Fuentes > > Estacion Biologica de Doñana - CSIC > Avda. Americo Vespucio s/n > 41092 Sevilla > Spain > Tel. (W) +34 95 44 66 700 ext. 1082 > Tel. (M) +34 670 89 1478 > http://www.ebd.csic.es/ > > Conservation and Evolutionary Genetics Group: > http://www.consevol.org/ > > [email protected] > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
