Hi Laura, Just adding to Greg's comment here; if you are familiar with Perl, you can use the Ensembl Perl API (http://www.ensembl.org/info/docs/api/core/index.html#api) for extracting the canonical transcripts for any of the species that we annotate.
If you need help with the API or any other data sets from Ensembl, please contact our help-desk ([email protected]). Best regards, Amonida -- Amonida Zadissa Ph.D. Deputy team leader EnsEMBL Genebuild team Wellcome Trust Sanger Institute England On 19/06/2012 21:47, Greg Roe wrote: > Hi Laura, > > We don't have exactly what you're asking for. I would suggest contacting > Ensembl (http://uswest.ensembl.org/info/about/contact/index.html) with > this question. > > If you have any additional questions, please reply to: [email protected] > - > Greg Roe > UCSC Genome Bioinformatics Group > > > On 6/18/12 10:26 AM, Laura Smith wrote: >> To whom it may concern: >> >> Hello, >> >> I would like to get the >> canonical transcripts for ENSEMBL. Is there a way to get this >> online from UCSC genome browser or a link to this data perhaps? >> >> If so, >> would it be possible for you to send me the directions to download it >> please? I looked at UCSC genome browser website, but couldn't figure >> out where the canonical transcripts are: >> ensembl. >> >> I would very much appreciate your help on this matter. >> >> Thank you, >> Laura >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
