Hello, Oliver. You are correct that the refLink.txt.gz file is indeed missing from rn4. We are currently looking into this and hopefully the file should be available soon. I checked and the file for hg19 is present, so you should be able to download that now:
HTTP: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refLink.txt.gz FTP: ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refLink.txt.gz In the meantime, you can use our Table Browser to download the rn4 refLink table. If you're unfamiliar with the Table Browser, please see the User's Guide at http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html. To download the rn4 refLink table, please perform the following steps: 1. From http://genome.ucsc.edu, select "Tables" from the blue navigation bar at the top of the screen. 2. Select the following options: Clade: Mammal Genome: Rat Assembly: Nov. 2004 (Baylor 3.4/rn4) Group: Genes and Gene Prediction Tracks Track: RefSeq Genes Table: refLink Output format: all fields from selected table Output file: specify a filename 3. Click the "get output" button Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Oliver Hummel Sent: Tuesday, June 19, 2012 4:27 PM To: [email protected] Subject: [Genome] refLink.txt Hello UCSC, I'm looking for "refLink.txt.gz" files within FTP http://hgdownload.cse.ucsc.edu/goldenPath/rn4/database/ (as well hg19). These files (e.g. refLink.sql) were built on June 17th. , but the needed "refLink.tx.gz" is obviously not in place. Were to find it? Thanks, Oliver _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
