Hi Nipun, You can get 3'UTR sequence from the Table Browser using steps such as in this previous mailing list question: https://lists.soe.ucsc.edu/pipermail/genome/2008-May/016356.html
That's using the UCSC Genes genes set, but you can do it with other gene sets too, e.g., RefSeq Genes. I assume you have some sort list of proteins or genes? If you have a gene list, just follow the instructions in that link and paste the list of identifiers in. Note, that UCSC Genes will let you paste in protein IDs if they are in the "NCBI protein Accession number" format (e.g., NP_542165). Also be aware that your results for one protein might return more than one transcript back. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 7/2/12 1:20 PM, Nipun Chopra wrote: > Hello, > I am a graduate student and am trying to find the sequence for the 3'UTRs > of various proteins. I cannot figure out how I can do the same. Please > help! > Sincerely, > -Nipun Chopra > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
