Thanks Benda for the suggestions. However, to get things to work here I had to get the system admin to modify the host /etc/{group, passwd} files and that enabled me to emerge sys-libs/glibc with your prefixify changes through modification to linux-standalone/profile.bashrc. Things seem to be 'good' now. By the way, I'm just over the border relative to kernels on the host
uname -a Linux blitzen 3.2.0-4-amd64 #1 SMP Debian 3.2.88-1 x86_64 Intel(R) Xeon(R) CPU E5-1650 0 @ 3.20GHz GenuineIntel GNU/Linux Steve On Wed, 29 Nov 2017 13:11:05 +0900 Benda Xu <hero...@gentoo.org> wrote: > Hi Steven, > > Steven Trogdon <strog...@d.umn.edu> writes: > > > Upgraded my prefix rap today doing: > > > > emerge -1 portage > > emerge -uDN system > > > > I don't think the portage upgrade is the issue since the system proceeded to > > upgrade, although with numerous warnings like: > > > > portage: 'portage' user or group missing. > > For the defaults, line 1 goes into passwd, and 2 into group. > > portage:x:250:250:portage:/var/tmp/portage:/bin/false > > portage::250:portage > > *** WARNING *** For security reasons, only system administrators should be > > *** WARNING *** allowed in the portage group. Untrusted users or processes > > *** WARNING *** can potentially exploit the portage group for attacks such > > as *** WARNING *** local privilege escalation. > > The two seem to be related. > > > I'm now unable to emerge anything. I think the culprit is the upgrade > > of glibc from 2.25-r9 -> 2.26-r3 although it could be something else. Prior > > to the upgrade getent <group | passwd> was parsing EPREFIX/etc/<group | > > passwd> for group and passwd info. It clearly is now parsing /etc/<group | > > passwd> passwd>. And I > > have no control over what is under /etc. > > Do you have a binary backup of glibc-2.25 to rollback? If so, it can be > used to rollback. Otherwise another possible fix is available below. > > > In fact the host getent parses db files in a non-standard location to > > get group/passwd info. When I attempt to emerge I get things like > > > > !!! Directory initialization failed: > > '/storage/strogdon/gentoo-rap/var/lib/portage' !!! > > chown('/storage/strogdon/gentoo-rap/var/lib/portage', -1, 0) !!! Directory > > initialization failed: '/storage/strogdon/gentoo-rap/var/cache/edb' !!! > > chown('/storage/strogdon/gentoo-rap/var/cache/edb', -1, 0) [Errno 1] > > Operation not permitted: > > [...] > > done! > > > > and the emerge fails. > > > > From within prefix > > id > > uid=105600 gid=925 groups=925 > > > > From the host > > id > > uid=105600(strogdon) gid=925(math) groups=925(math) > > > > Looking for things to try without re-installing prefix[rap]. > > From glibc-2.26, the path /etc/passwd is handled by another file. I > have just made a fix at > > > https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ab2e3a4026e093e0cf17b46b5bcc308a861f93c8 > > To recover with the fixed glibc-2.26, one solution has been explored in the > IRC: > > export PORTAGE_INST_UID=105600 PORTAGE_INST_GID=925 PORTAGE_GRPNAME=math > emerge --oneshot sys-libs/glibc > > Yours, > Benda
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