commit: be1836449dfcf8edc09329c66bb389a879f15fac
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 10 17:59:32 2014 +0000
Commit: Sebastien Fabbro <bicatali <AT> gentoo <DOT> org>
CommitDate: Thu Apr 10 17:59:32 2014 +0000
URL:
http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=be183644
sci-libs/itk: Version bump. Reworked ebuild
Package-Manager: portage-2.2.8-prefix
---
sci-libs/itk/ChangeLog | 11 ++
...p-TransformFileReader-TransformFileWriter.patch | 50 +++++++
...itkQuasiNewtonOptimizerv4-wrapping-warnin.patch | 28 ++++
...itkGradientDescentOptimizerv4-wrapping-wa.patch | 73 ++++++++++
...OptimizerParameterScalesEstimatorTemplate.patch | 30 ++++
.../0005-make-gdcm-helper-library-static.patch | 11 ++
sci-libs/itk/files/nrrdio-linking.patch | 15 ++
sci-libs/itk/itk-4.5.1.ebuild | 154 +++++++++++++++++++++
8 files changed, 372 insertions(+)
diff --git a/sci-libs/itk/ChangeLog b/sci-libs/itk/ChangeLog
index 6aeb88a..b68a4b5 100644
--- a/sci-libs/itk/ChangeLog
+++ b/sci-libs/itk/ChangeLog
@@ -2,6 +2,17 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*itk-4.5.1 (10 Apr 2014)
+
+ 10 Apr 2014; Sébastien Fabbro <bicat...@gentoo.org>
+ +files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch,
+ +files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch,
+ +files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch,
+ +files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch,
+ +files/0005-make-gdcm-helper-library-static.patch,
+ +files/nrrdio-linking.patch, +itk-4.5.1.ebuild:
+ sci-libs/itk: Version bump. Reworked ebuild
+
06 Jan 2014; Justin Lecher <j...@gentoo.org> metadata.xml:
Fix missing local USE
diff --git
a/sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
b/sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
new file mode 100644
index 0000000..094ee32
--- /dev/null
+++
b/sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
@@ -0,0 +1,50 @@
+From d069b7b94287dae15fcaf707775f5dd2bbebcc38 Mon Sep 17 00:00:00 2001
+From: Matt McCormick <matt.mccorm...@kitware.com>
+Date: Wed, 5 Feb 2014 15:52:34 -0500
+Subject: [PATCH 1/3] BUG: Wrap TransformFileReader, TransformFileWriter.
+
+Missing CMakeLists.txt in the wrapping directory. Need to explicitly include
+the headers after "Template" was appended to the class name.
+
+Suggested-by: Sami Koho <sami.k...@gmail.com>
+
+Change-Id: I6f994bb18f37d5adf1d0f0311fa73506c41239a7
+---
+ Modules/IO/TransformBase/wrapping/CMakeLists.txt | 3 +++
+ Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap | 2 ++
+ Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap | 2 ++
+ 3 files changed, 7 insertions(+)
+ create mode 100644 Modules/IO/TransformBase/wrapping/CMakeLists.txt
+
+diff --git a/Modules/IO/TransformBase/wrapping/CMakeLists.txt
b/Modules/IO/TransformBase/wrapping/CMakeLists.txt
+new file mode 100644
+index 0000000..6072567
+--- /dev/null
++++ b/Modules/IO/TransformBase/wrapping/CMakeLists.txt
+@@ -0,0 +1,3 @@
++itk_wrap_module(ITKIOTransformBase)
++itk_auto_load_submodules()
++itk_end_wrap_module()
+diff --git a/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
b/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
+index 9b52fbc..662df9e 100644
+--- a/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
++++ b/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
+@@ -1,3 +1,5 @@
++set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
++itk_wrap_include("itkTransformFileReader.h")
+ itk_wrap_class("itk::TransformFileReaderTemplate" POINTER)
+ foreach(t ${WRAP_ITK_REAL})
+ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
+diff --git a/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
b/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
+index 4f1ac4a..356aaf3 100644
+--- a/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
++++ b/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
+@@ -1,3 +1,5 @@
++set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
++itk_wrap_include("itkTransformFileWriter.h")
+ itk_wrap_class("itk::TransformFileWriterTemplate" POINTER)
+ foreach(t ${WRAP_ITK_REAL})
+ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
+--
+1.8.5.3
+
diff --git
a/sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
b/sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
new file mode 100644
index 0000000..4c74d54
--- /dev/null
+++
b/sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
@@ -0,0 +1,28 @@
+From 66d2955fbe5528d9df216c639277d1d2686447e5 Mon Sep 17 00:00:00 2001
+From: Michka Popoff <michkapop...@gmail.com>
+Date: Fri, 7 Feb 2014 19:24:49 +0100
+Subject: [PATCH 2/3] COMP: Fixed itkQuasiNewtonOptimizerv4 wrapping warnings
+
+The warning :
+/scratch/dashboards/Linux-x86_64-gcc4.4-WrapITK/ITK-build/Wrapping/Modules/ITKOptimizersv4/itkQuasiNewtonOptimizerv4.xml:
warning(5): Unknown type type: itk::QuasiNewtonOptimizerv4 [typedef]
+/scratch/dashboards/Linux-x86_64-gcc4.4-WrapITK/ITK-build/Wrapping/Modules/ITKOptimizersv4/itkQuasiNewtonOptimizerv4.xml:
warning(4): ITK type not wrapped, or currently not known:
itk::QuasiNewtonOptimizerv4Template< double >
+---
+ .../Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap | 8 +++++++-
+ 1 file changed, 7 insertions(+), 1 deletion(-)
+
+diff --git
a/Modules/Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap
b/Modules/Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap
+index 4a43dd4..7eed11c 100644
+--- a/Modules/Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap
++++ b/Modules/Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap
+@@ -1 +1,7 @@
+-itk_wrap_simple_class("itk::QuasiNewtonOptimizerv4" POINTER)
++set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
++itk_wrap_include("itkQuasiNewtonOptimizerv4.h")
++itk_wrap_class("itk::QuasiNewtonOptimizerv4Template" POINTER)
++ foreach(t ${WRAP_ITK_REAL})
++ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
++ endforeach(t)
++itk_end_wrap_class()
+--
+1.8.5.3
+
diff --git
a/sci-libs/itk/files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch
b/sci-libs/itk/files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch
new file mode 100644
index 0000000..d77345e
--- /dev/null
+++
b/sci-libs/itk/files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch
@@ -0,0 +1,73 @@
+From fced46ce8769b4edc7971ea0928045390b5c3f84 Mon Sep 17 00:00:00 2001
+From: Michka Popoff <michkapop...@gmail.com>
+Date: Mon, 10 Feb 2014 09:41:42 +0100
+Subject: [PATCH 3/3] COMP: Fixed itkGradientDescentOptimizerv4 wrapping
+ warnings
+
+I splitted the 3 wrapping calls in 3 separate files and fixed the wrapping.
+
+The warnings :
+/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml:
warning(5): Unknown type type: itk::GradientDescentOptimizerBasev4 [typedef]
+/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml:
warning(5): Unknown type type: itk::GradientDescentOptimizerv4 [typedef]
+/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml:
warning(5): Unknown type type: itk::ObjectToObjectOptimizerBase [typedef]
+/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml:
warning(4): ITK type not wrapped, or currently not known:
itk::GradientDescentOptimizerBasev4Template< double >
+/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml:
warning(4): ITK type not wrapped, or currently not known:
itk::GradientDescentOptimizerv4Template< double >
+/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml:
warning(4): ITK type not wrapped, or currently not known:
itk::ObjectToObjectOptimizerBaseTemplate< double >
+
+Should also hopefully fix the new error on the dashboard I introduced by
fixing the itkQuasiNewtonOptimizerv4 warnings
(http://review.source.kitware.com/#/c/14317/)
+/home/kevin/kitware/ITK_Build/Wrapping/Typedefs/itkQuasiNewtonOptimizerv4.i:87:
Warning 401: Nothing known about base class
'itk::GradientDescentOptimizerv4Template< float >'. Ignored.
+/home/kevin/kitware/ITK_Build/Wrapping/Typedefs/itkQuasiNewtonOptimizerv4.i:87:
Warning 401: Maybe you forgot to instantiate
'itk::GradientDescentOptimizerv4Template< float >' using %template.
+
+Change-Id: I15b6af11690ed6efeaced68f73af5212ab5dc364
+---
+ .../wrapping/itkGradientDescentOptimizerBasev4.wrap | 7 +++++++
+ .../Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap | 10 +++++++---
+ .../Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap | 7 +++++++
+ 3 files changed, 21 insertions(+), 3 deletions(-)
+ create mode 100644
Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerBasev4.wrap
+ create mode 100644
Modules/Numerics/Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap
+
+diff --git
a/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerBasev4.wrap
b/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerBasev4.wrap
+new file mode 100644
+index 0000000..74f5a6c
+--- /dev/null
++++
b/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerBasev4.wrap
+@@ -0,0 +1,7 @@
++set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
++itk_wrap_include("itkGradientDescentOptimizerBasev4.h")
++itk_wrap_class("itk::GradientDescentOptimizerBasev4Template" POINTER)
++ foreach(t ${WRAP_ITK_REAL})
++ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
++ endforeach(t)
++itk_end_wrap_class()
+diff --git
a/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap
b/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap
+index d53a176..3236448 100644
+--- a/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap
++++ b/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap
+@@ -1,3 +1,7 @@
+-itk_wrap_simple_class("itk::ObjectToObjectOptimizerBase" POINTER)
+-itk_wrap_simple_class("itk::GradientDescentOptimizerBasev4" POINTER)
+-itk_wrap_simple_class("itk::GradientDescentOptimizerv4" POINTER)
++set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
++itk_wrap_include("itkGradientDescentOptimizerv4.h")
++itk_wrap_class("itk::GradientDescentOptimizerv4Template" POINTER)
++ foreach(t ${WRAP_ITK_REAL})
++ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
++ endforeach(t)
++itk_end_wrap_class()
+diff --git
a/Modules/Numerics/Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap
b/Modules/Numerics/Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap
+new file mode 100644
+index 0000000..61b2c44
+--- /dev/null
++++
b/Modules/Numerics/Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap
+@@ -0,0 +1,7 @@
++set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
++itk_wrap_include("itkObjectToObjectOptimizerBase.h")
++itk_wrap_class("itk::ObjectToObjectOptimizerBaseTemplate" POINTER)
++ foreach(t ${WRAP_ITK_REAL})
++ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
++ endforeach(t)
++itk_end_wrap_class()
+--
+1.8.5.3
+
diff --git
a/sci-libs/itk/files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch
b/sci-libs/itk/files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch
new file mode 100644
index 0000000..83b3956
--- /dev/null
+++
b/sci-libs/itk/files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch
@@ -0,0 +1,30 @@
+Author: Matt McCormick <matt.mccorm...@kitware.com>
+Date: Thu Feb 6 10:26:49 2014 -0500
+
+ COMP: Wrap OptimizerParameterScalesEstimatorTemplate.
+
+ The class name changed and it became templated. Fixes:
+
+
/playpen/blowekamp/MacOSX-WrapITK/ITK-build/Wrapping/Modules/ITKOptimizersv4/itkOptimizerParameterScalesEstimator.xml:
+ warning(5): Unknown type type: itk::OptimizerParameterScalesEstimator
+ [typedef]
+
/playpen/blowekamp/MacOSX-WrapITK/ITK-build/Wrapping/Modules/ITKOptimizersv4/itkOptimizerParameterScalesEstimator.xml:
+ warning(4): ITK type not wrapped, or currently not known:
+ itk::OptimizerParameterScalesEstimatorTemplate< double >
+
+ Change-Id: Ic6b4d6fba10d5d6c7b58de8d842bad6511e1ae7b
+
+diff --git
a/Modules/Numerics/Optimizersv4/wrapping/itkOptimizerParameterScalesEstimator.wrap
b/Modules/Numerics/Optimizersv4/wrapping/itkOptim
+index efd6a8c..a647ee4 100644
+---
a/Modules/Numerics/Optimizersv4/wrapping/itkOptimizerParameterScalesEstimator.wrap
++++
b/Modules/Numerics/Optimizersv4/wrapping/itkOptimizerParameterScalesEstimator.wrap
+@@ -1 +1,7 @@
+-itk_wrap_simple_class("itk::OptimizerParameterScalesEstimator" POINTER)
++set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
++itk_wrap_include("itkOptimizerParameterScalesEstimator.h")
++itk_wrap_class("itk::OptimizerParameterScalesEstimatorTemplate" POINTER)
++ foreach(t ${WRAP_ITK_REAL})
++ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
++ endforeach(t)
++itk_end_wrap_class()
+
diff --git a/sci-libs/itk/files/0005-make-gdcm-helper-library-static.patch
b/sci-libs/itk/files/0005-make-gdcm-helper-library-static.patch
new file mode 100644
index 0000000..d760ac7
--- /dev/null
+++ b/sci-libs/itk/files/0005-make-gdcm-helper-library-static.patch
@@ -0,0 +1,11 @@
+diff --git a/Modules/ThirdParty/GDCM/src/CMakeLists.txt
b/Modules/ThirdParty/GDCM/src/CMakeLists.txt
+index e98077c..70f4286 100644
+--- a/Modules/ThirdParty/GDCM/src/CMakeLists.txt
++++ b/Modules/ThirdParty/GDCM/src/CMakeLists.txt
+@@ -1,5 +1,5 @@
+ if(ITK_USE_SYSTEM_GDCM)
+- add_library(ITKGDCM ITK-GDCM.cxx)
++ add_library(ITKGDCM STATIC ITK-GDCM.cxx)
+ target_link_libraries(ITKGDCM gdcmDICT gdcmMSFF)
+ itk_module_target(ITKGDCM)
+ return()
diff --git a/sci-libs/itk/files/nrrdio-linking.patch
b/sci-libs/itk/files/nrrdio-linking.patch
new file mode 100644
index 0000000..a549650
--- /dev/null
+++ b/sci-libs/itk/files/nrrdio-linking.patch
@@ -0,0 +1,15 @@
+Description: Link libITKNrrdIO with -lm (needed for sqrt)
+Author: Steve Robbins <s...@debian.org>
+Forwarded: no
+
+---
insighttoolkit4-4.5.0.orig/Modules/ThirdParty/NrrdIO/src/NrrdIO/CMakeLists.txt
++++ insighttoolkit4-4.5.0/Modules/ThirdParty/NrrdIO/src/NrrdIO/CMakeLists.txt
+@@ -64,7 +64,7 @@
+ ADD_DEFINITIONS(-DTEEM_ZLIB=1)
+
+ ADD_LIBRARY(ITKNrrdIO ${nrrdio_SRCS} )
+-TARGET_LINK_LIBRARIES(ITKNrrdIO ${ITKZLIB_LIBRARIES})
++TARGET_LINK_LIBRARIES(ITKNrrdIO ${ITKZLIB_LIBRARIES} -lm)
+
+ IF(ITK_LIBRARY_PROPERTIES)
+ SET_TARGET_PROPERTIES(ITKNrrdIO PROPERTIES ${ITK_LIBRARY_PROPERTIES})
diff --git a/sci-libs/itk/itk-4.5.1.ebuild b/sci-libs/itk/itk-4.5.1.ebuild
new file mode 100644
index 0000000..ba0ca28
--- /dev/null
+++ b/sci-libs/itk/itk-4.5.1.ebuild
@@ -0,0 +1,154 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_5,2_6,2_7} )
+
+inherit eutils toolchain-funcs cmake-utils python-single-r1
+
+MYPN=InsightToolkit
+MYP=${MYPN}-${PV}
+DOC_PV=4.5.0
+
+DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
+HOMEPAGE="http://www.itk.org";
+SRC_URI="mirror://sourceforge/${PN}/${MYP}.tar.xz
+ doc? ( mirror://sourceforge/${PN}/Doxygen${MYPN}-${DOC_PV}.tar.gz )"
+RESTRICT="primaryuri"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="debug doc examples fftw itkv3compat python review sse2 test vtkglue"
+
+RDEPEND="
+ dev-libs/double-conversion:0=
+ media-libs/libpng:0=
+ media-libs/tiff:0=
+ sci-libs/dcmtk:0=
+ sci-libs/hdf5:0=[cxx]
+ sys-libs/zlib:0=
+ virtual/jpeg
+ fftw? ( sci-libs/fftw:3.0= )
+ vtkglue? ( sci-libs/vtk:0=[python?] )
+"
+DEPEND="${RDEPEND}
+ python? ( ${PYTHON_DEPS}
+ >=dev-lang/swig-2.0
+ >=dev-cpp/gccxml-0.9.0_pre20120309 )
+ doc? ( app-doc/doxygen )
+"
+
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+S="${WORKDIR}/${MYP}"
+
+PATCHES=(
+
"${FILESDIR}"/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
+
"${FILESDIR}"/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
+
"${FILESDIR}"/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch
+
"${FILESDIR}"/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch
+ "${FILESDIR}"/0005-make-gdcm-helper-library-static.patch
+ "${FILESDIR}"/nrrdio-linking.patch
+)
+
+pkg_pretend() {
+ if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then
+ elog "To tune ITK to make the best use of working memory you
can set"
+ elog " ITK_COMPUTER_MEMORY_SIZE=XX"
+ elog "in make.conf, default is 1 (unit is GB)"
+ fi
+ if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then
+ elog "For Python language bindings, you can define the
dimensions"
+ elog "you want to create bindings for by setting"
+ elog " ITK_WRAP_DIMS=X;Y;Z..."
+ elog "in make.conf, default is 2;3 for 2D and 3D data"
+ fi
+}
+
+src_configure() {
+ sed -i \
+ -e '/find_package/d' \
+ Modules/ThirdParty/DoubleConversion/CMakeLists.txt || die
+
+ local mycmakeargs=(
+ -DBUILD_SHARED_LIBS=ON
+ -DITK_USE_SYSTEM_DCMTK=ON
+ -DITK_USE_SYSTEM_DOUBLECONVERSION=ON
+ -DITK_USE_SYSTEM_GCCXML=ON
+ -DITK_USE_SYSTEM_HDF5=ON
+ -DITK_USE_SYSTEM_JPEG=ON
+ -DITK_USE_SYSTEM_PNG=ON
+ -DITK_USE_SYSTEM_SWIG=ON
+ -DITK_USE_SYSTEM_TIFF=ON
+ -DITK_USE_SYSTEM_ZLIB=ON
+ -DITK_BUILD_DEFAULT_MODULES=ON
+ -DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}"
+ -DWRAP_ITK_JAVA=OFF
+ -DWRAP_ITK_TCL=OFF
+
-Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion"
+ -Ddouble-conversion_LIBRARIES="-ldouble-conversion"
+ $(cmake-utils_use_build test TESTING)
+ $(cmake-utils_use_build examples EXAMPLES)
+ $(cmake-utils_use review ITK_USE_REVIEW)
+ $(cmake-utils_use itkv3compat ITKV3_COMPATIBILITY)
+ $(cmake-utils_use sse2 VNL_CONFIG_ENABLE_SSE2)
+ )
+ if use fftw; then
+ mycmakeargs+=(
+ -DUSE_FFTWD=ON
+ -DUSE_FFTWF=ON
+ -DUSE_SYSTEM_FFTW=ON
+ -DITK_WRAP_double=ON
+ -DITK_WRAP_vector_double=ON
+ -DITK_WRAP_covariant_vector_double=ON
+ -DITK_WRAP_complex_double=ON
+ )
+ fi
+ if use vtkglue; then
+ mycmakeargs+=(
+ -DModule_ITKVtkGlue=ON
+ )
+ fi
+ if use python; then
+ mycmakeargs+=(
+ -DITK_WRAP_PYTHON=ON
+ -DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}"
+ )
+ else
+ mycmakeargs+=(
+ -DITK_WRAP_PYTHON=OFF
+ )
+ fi
+ cmake-utils_src_configure
+}
+
+src_install() {
+ cmake-utils_src_install
+
+ if use examples; then
+ insinto /usr/share/doc/${PF}/examples
+ docompress -x /usr/share/doc/${PF}/examples
+ doins -r "${S}"/Examples/*
+ fi
+
+ echo "ITK_DATA_ROOT=${EROOT%/}/usr/share/${PN}/data" > ${T}/40${PN}
+ local ldpath="${EROOT%/}/usr/$(get_libdir)/InsightToolkit"
+ if use python; then
+ echo
"PYTHONPATH=${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >>
"${T}"/40${PN}
+
ldpath="${ldpath}:${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
+ fi
+ echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
+ doenvd "${T}"/40${PN}
+
+ if use doc; then
+ insinto /usr/share/doc/${PF}/api-docs
+ cd "${WORKDIR}"/html
+ rm *.md5 || die "Failed to remove superfluous hashes"
+ einfo "Installing API docs. This may take some time."
+ insinto /usr/share/doc/${PF}/api-docs
+ doins -r *
+ fi
+}
