commit: 5cdf64649280508520fc9b96b6926e0ce2c0d283 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sat Apr 12 12:29:38 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sat Apr 12 12:29:38 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5cdf6464
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci dev-python/ffnet/ChangeLog | 6 +- dev-python/ffnet/Manifest | 2 +- .../{ffnet-0.6.2.ebuild => ffnet-0.7.1.ebuild} | 23 +- dev-python/ffnet/metadata.xml | 10 +- sci-chemistry/gromacs/ChangeLog | 8 + sci-chemistry/gromacs/Manifest | 4 +- ...cs-5.0_beta1.ebuild => gromacs-5.0.9999.ebuild} | 50 +- ...{gromacs-9999.ebuild => gromacs-5.0_rc1.ebuild} | 43 +- sci-chemistry/gromacs/gromacs-9999.ebuild | 39 +- sci-chemistry/gromacs/metadata.xml | 11 +- sci-libs/dcmtk/ChangeLog | 14 +- sci-libs/dcmtk/Manifest | 4 +- sci-libs/dcmtk/dcmtk-3.5.4-r3.ebuild | 71 - sci-libs/dcmtk/dcmtk-3.5.5_pre20101008.ebuild | 79 - sci-libs/dcmtk/dcmtk-3.6.0.ebuild | 72 + sci-libs/dcmtk/files/02_dcmtk_3.6.0-1.patch | 89 + sci-libs/dcmtk/files/07_doxygen.patch | 1804 ++++++++++++++++++++ sci-libs/dcmtk/files/bug674361.patch | 1015 +++++++++++ sci-libs/dcmtk/files/dcmtk-asneeded.patch | 16 + sci-libs/dcmtk/files/dcmtk_version_number.patch | 131 ++ sci-libs/dcmtk/files/doubledes.patch | 31 + sci-libs/dcmtk/files/fixnull.patch | 36 + sci-libs/dcmtk/files/noleak.patch | 36 + sci-libs/dcmtk/files/nothrow.patch | 76 + sci-libs/dcmtk/files/prefs.patch | 26 + .../files/regression_stacksequenceisodd.patch | 98 ++ .../dcmtk/files/use_correct_number_of_TS.patch | 19 + sci-libs/dcmtk/metadata.xml | 30 +- sci-libs/itk/ChangeLog | 11 + sci-libs/itk/Manifest | 2 + ...p-TransformFileReader-TransformFileWriter.patch | 50 + ...itkQuasiNewtonOptimizerv4-wrapping-warnin.patch | 28 + ...itkGradientDescentOptimizerv4-wrapping-wa.patch | 73 + ...OptimizerParameterScalesEstimatorTemplate.patch | 30 + .../0005-make-gdcm-helper-library-static.patch | 11 + sci-libs/itk/files/nrrdio-linking.patch | 15 + .../itk/{itk-4.4.2-r1.ebuild => itk-4.5.1.ebuild} | 76 +- sci-mathematics/pulp/ChangeLog | 6 +- sci-mathematics/pulp/Manifest | 2 +- .../pulp/{pulp-1.5.3.ebuild => pulp-1.5.6.ebuild} | 16 +- sci-visualization/visit/visit-2.7.2.ebuild | 6 + 41 files changed, 3872 insertions(+), 297 deletions(-)