commit: c3475d9f4afad55d57ce8c09e8051281784f7950 Author: Alexander Puck Neuwirth <alexander <AT> neuwirth-informatik <DOT> de> AuthorDate: Mon May 5 23:34:19 2025 +0000 Commit: Alexander Puck Neuwirth <alexander <AT> neuwirth-informatik <DOT> de> CommitDate: Tue May 6 13:52:10 2025 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c3475d9f
sci-biology/ngs: treeclean Signed-off-by: Alexander Puck Neuwirth <alexander <AT> neuwirth-informatik.de> sci-biology/ngs/metadata.xml | 15 -------------- sci-biology/ngs/ngs-2.11.2.ebuild | 43 --------------------------------------- 2 files changed, 58 deletions(-) diff --git a/sci-biology/ngs/metadata.xml b/sci-biology/ngs/metadata.xml deleted file mode 100644 index f165e6cbc..000000000 --- a/sci-biology/ngs/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">ncbi/ngs</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/ngs/ngs-2.11.2.ebuild b/sci-biology/ngs/ngs-2.11.2.ebuild deleted file mode 100644 index 0574c5076..000000000 --- a/sci-biology/ngs/ngs-2.11.2.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_10 ) -inherit python-single-r1 java-pkg-2 - -DESCRIPTION="NGS Language Bindings " -HOMEPAGE="https://github.com/ncbi/ngs"; -SRC_URI="https://github.com/ncbi/ngs/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="public-domain" -SLOT="0" -KEYWORDS="~amd64" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -DEPEND="${PYTHON_DEPS} - sci-biology/bamtools - virtual/jdk:1.8 -" -RDEPEND="${DEPEND} - virtual/jre:1.8 -" - -src_configure() { - # this is some non-standard configure script - ./configure || die -} - -src_install() { - dodir /usr/include - dodir /etc/profile.d - # Hard way around hard coded paths - find . -type f -exec sed -i \ - -e "s:/usr/local:${ED}/usr:g" \ - -e "s:/etc:${ED}/etc:g" \ - -e "s:/usr/lib:${ED}/usr/lib:g" \ - -e "s:/usr/include:${ED}/usr/include:g" \ - -e "s:setup.py -q install:setup.py install --root="${D}":g" \ - {} \; || die - default -}
