commit: a4cb204b1513efc3901a92bebacf0cb45f134a5b Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Mar 19 10:33:12 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Mar 19 10:33:12 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a4cb204b
removing KEYWORDS until the perl files are installed to some other place. At the moment I get: 'perl-module.eclass: Suspicious environment values found. PERL5LIB="/usr/lib64/perl5/vendor_perl/5.18.2/TransDecoder"' Package-Manager: portage-2.2.15 sci-biology/transdecoder/ChangeLog | 8 ++++++++ ...ecoder-20140704.ebuild => transdecoder-2.0.1.ebuild} | 17 ++++++++--------- sci-biology/transdecoder/transdecoder-20140704.ebuild | 2 +- 3 files changed, 17 insertions(+), 10 deletions(-) diff --git a/sci-biology/transdecoder/ChangeLog b/sci-biology/transdecoder/ChangeLog index 87a58f9..2b30ad0 100644 --- a/sci-biology/transdecoder/ChangeLog +++ b/sci-biology/transdecoder/ChangeLog @@ -2,6 +2,14 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*transdecoder-2.0.1 (19 Mar 2015) + + 19 Mar 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +transdecoder-2.0.1.ebuild, transdecoder-20140704.ebuild: + removing KEYWORDS until the perl files are installed to some other place. At + the moment I get: 'perl-module.eclass: Suspicious environment values found. + PERL5LIB="/usr/lib64/perl5/vendor_perl/5.18.2/TransDecoder"' + 15 Feb 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> transdecoder-20140704.ebuild: drop hmmer-3 dependency, it is an optional dependency only diff --git a/sci-biology/transdecoder/transdecoder-20140704.ebuild b/sci-biology/transdecoder/transdecoder-2.0.1.ebuild similarity index 80% copy from sci-biology/transdecoder/transdecoder-20140704.ebuild copy to sci-biology/transdecoder/transdecoder-2.0.1.ebuild index c8af896..eaa6e69 100644 --- a/sci-biology/transdecoder/transdecoder-20140704.ebuild +++ b/sci-biology/transdecoder/transdecoder-2.0.1.ebuild @@ -8,11 +8,11 @@ inherit perl-module DESCRIPTION="Extract ORF/CDS regions from FASTA sequences" HOMEPAGE="http://sourceforge.net/projects/transdecoder/"; -SRC_URI="http://downloads.sourceforge.net/project/transdecoder/TransDecoder_r20140704.tar.gz"; +SRC_URI="https://github.com/TransDecoder/TransDecoder/archive/"${PV}".tar.gz -> ${P}.tar.gz" LICENSE="BSD-BroadInstitute" SLOT="0" -KEYWORDS="~amd64" +KEYWORDS="" IUSE="" DEPEND="sci-biology/hmmer @@ -21,14 +21,13 @@ DEPEND="sci-biology/hmmer sci-biology/ffindex" RDEPEND="${DEPEND}" -S="${WORKDIR}"/TransDecoder_r20140704 +S="${WORKDIR}"/TransDecoder-2.0.1 -src_prepare(){ - rm -rf 3rd_party - mv Makefile Makefile.old - epatch "${FILESDIR}"/TransDecoder.patch - epatch "${FILESDIR}"/pfam_runner.pl.patch -} +##src_prepare(){ +# #mv Makefile Makefile.old +# #epatch "${FILESDIR}"/TransDecoder.patch +# #epatch "${FILESDIR}"/pfam_runner.pl.patch +#} # avoid fetching 1.5TB "${S}"/pfam/Pfam-AB.hmm.bin, see # "Re: [Transdecoder-users] Announcement: Transdecoder release r20140704" thread in archives diff --git a/sci-biology/transdecoder/transdecoder-20140704.ebuild b/sci-biology/transdecoder/transdecoder-20140704.ebuild index c8af896..ed060b3 100644 --- a/sci-biology/transdecoder/transdecoder-20140704.ebuild +++ b/sci-biology/transdecoder/transdecoder-20140704.ebuild @@ -12,7 +12,7 @@ SRC_URI="http://downloads.sourceforge.net/project/transdecoder/TransDecoder_r201 LICENSE="BSD-BroadInstitute" SLOT="0" -KEYWORDS="~amd64" +KEYWORDS="" IUSE="" DEPEND="sci-biology/hmmer
