commit: 0ca6e518df02e023f0cb15986595545acff9def7
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Thu Jul 31 18:27:52 2025 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Thu Jul 31 22:37:53 2025 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0ca6e518
sci-mathematics/petsc: add 3.23.4
Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org>
sci-mathematics/petsc/Manifest | 1 +
sci-mathematics/petsc/petsc-3.23.4.ebuild | 238 ++++++++++++++++++++++++++++++
2 files changed, 239 insertions(+)
diff --git a/sci-mathematics/petsc/Manifest b/sci-mathematics/petsc/Manifest
index 7bbc10df8aaf..705f1e4c2ba7 100644
--- a/sci-mathematics/petsc/Manifest
+++ b/sci-mathematics/petsc/Manifest
@@ -1,2 +1,3 @@
DIST petsc-3.22.2.tar.gz 16753088 BLAKE2B
6c4d63ef36fc65913322f85d63dfd037268ba957e07a3d2d4df1e71f4b5c7625cfe1ea3007a97b78886d526509ae381ebc90f9be047c2ef93edd1b250c02d59e
SHA512
77f4f51aea56fc254dcc0df254bc69ee2cf91a598834108bfc652b0c21dbb515e7b1000e8771fec8d2b5e4c0f56c50762aa77d0e8b36c417c0eafe6fffb213af
DIST petsc-3.23.3.tar.gz 16111822 BLAKE2B
7295078b93762056ee35a275c7e12ad791830bebc01ca298575054462c479cd0202cdfd1da60cce5c726d7d17cfb1215007c111a1c25a8d5185a32b63079b712
SHA512
f05fa640803b999b485a915430d712d0f6838b4570c2c8c11c209cc0fb181c618fb44be3dcb98655fd62039fa6c026f036d408cf4d2c5ae78e60d71abdf29aad
+DIST petsc-3.23.4.tar.gz 16115933 BLAKE2B
ac606d90290c18c15d6444a481cc9ca17d1906b9c56411a5b964edae296cc303013f3f925aa139c6c8f2dd064100b0ec0f145021e872d589b53cdc298dc7be10
SHA512
df7be3ee7194a20f414d9c1bdf9d771f0eb66e30ee4c84e79e8fc7a4a21b018ad4df77d84195a4b5b6659a12cae845fd1f6554c730177e3e0cea3faa8432dc8f
diff --git a/sci-mathematics/petsc/petsc-3.23.4.ebuild
b/sci-mathematics/petsc/petsc-3.23.4.ebuild
new file mode 100644
index 000000000000..6e581ebc0167
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.23.4.ebuild
@@ -0,0 +1,238 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..13} pypy3 pypy3_11 )
+
+inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="https://petsc.org/release/";
+SRC_URI="https://web.cels.anl.gov/projects/petsc/download/release-snapshots/${P}.tar.gz";
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="afterimage boost complex-scalars cuda debug +examples fftw fortran
+ hdf5 hypre int64 mpi metis mumps scotch superlu threads X"
+
+# readd sparse when suitesparse-5.6.0 is in tree
+# sparse? ( >=sci-libs/suitesparse-5.6.0 >=sci-libs/cholmod-1.7.0 )
+# $(use_with sparse suitesparse) \
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ cuda? ( >=dev-util/nvidia-cuda-toolkit-3.2 )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5:=[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.18.0[int64?,mpi?] )
+ metis? ( >=sci-libs/parmetis-4 )
+ mpi? ( virtual/mpi[fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[int64?,mpi?] )
+ superlu? ( >=sci-libs/superlu-5 )
+ X? ( x11-libs/libX11 )
+"
+DEPEND="
+ ${RDEPEND}
+ ${PYTHON_DEPS}
+"
+BDEPEND="
+ dev-build/cmake
+ virtual/pkgconfig
+"
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
+ fftw? ( mpi )
+ hdf5? ( mpi )
+ hypre? ( mpi !superlu )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ superlu? ( !hypre )
+"
+PATCHES=(
+ "${FILESDIR}/${PN}-3.21.3-disable-rpath.patch"
+ "${FILESDIR}"/${PN}-3.21.3-fix_sandbox_violation.patch
+)
+
+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+}
+# add external library:
+# petsc_with use_flag libname libdir
+# petsc_with use_flag libname include linking_libs
+petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+}
+
+# select between configure options depending on use flag
+petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
+
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
+ # bug 771711
+ # configureMPIEXEC and configureMPITypes access /dev/nvidiactl
+ addpredict /dev/nvidiactl
+
+ # bug 810841
+ addpredict /dev/kfd
+
+ local myopt
+
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-c-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ tc-export AR RANLIB
+
+ # C Support on CXX builds is enabled if possible i.e. when not using
+ # complex scalars (no complex type for both available at the same time)
+
+ econf \
+ scrollOutput=1 \
+ AR="${AR}" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CPPFLAGS="${CPPFLAGS}" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ CXXOPTFLAGS="${CXXFLAGS} -fPIC" \
+ FCFLAGS="${FCFLAGS} -fPIC" \
+ FFLAGS="${FFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ MAKEFLAGS="${MAKEFLAGS}" \
+ RANLIB="${RANLIB}" \
+ --prefix="${EPREFIX}/usr/$(get_libdir)/petscdir/" \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas
lapack)" \
+ --with-cmake:BOOL=1 \
+ --with-gnu-compilers \
+ --with-imagemagick=0 \
+ --with-petsc-arch="${PETSC_ARCH}" \
+ --with-precision=double \
+ --with-python=0 \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-windows-graphics=0 \
+ $(petsc_enable cuda cudac) \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable fortran) \
+ $(petsc_enable mpi) \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_enable threads pthread) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_select mpi fc mpif90 $(tc-getFC)) \
+ $(petsc_with afterimage afterimage /usr/include/libAfterImage
-lAfterImage) \
+ $(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \
+ $(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \
+ $(petsc_with scotch ptscotch /usr/include/scotch
[-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack /usr/include/scalapack
-lscalapack) \
+ $(petsc_with mumps mumps /usr/include
[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77
$(tc-getF77))") \
+ $(use int64 && echo "--with-index-size=64") \
+ $(use_with boost) \
+ $(use_with fftw) \
+ $(use_with hdf5) \
+ $(use_with X x) \
+ $(use_with X x11)
+}
+
+src_install() {
+ emake DESTDIR="${ED}" install
+
+ #
+ # Clean up the mess:
+ #
+
+ # put all include directories under a proper subdirectory
+ mkdir "${ED}"/usr/include || die "mkdir failed (include)"
+ mv "${ED}"/usr/{$(get_libdir)/petscdir/include,include/petsc} || die
"mv failed (include)"
+
+ # put libraries and pkconfig file into proper place
+ mv "${ED}"/usr/$(get_libdir)/petscdir/lib/{libpetsc*,pkgconfig} \
+ "${ED}/usr/$(get_libdir)" || die "mv failed (lib)"
+
+ # move share to proper location
+ mv "${ED}"/usr/{$(get_libdir)/petscdir/share,share} || die "mv failed
(share)"
+
+ # fix pc files:
+ sed -i \
+ -e 's#include$#include/petsc#' \
+ -e "s#lib\$#$(get_libdir)#" \
+ -e "s#^prefix=.*petscdir\$#prefix=${EPREFIX}/usr#" \
+ "${ED}"/usr/$(get_libdir)/pkgconfig/*.pc || die "sed failed
(pkgconfig)"
+
+ # recreate a "valid" petscdir:
+ for i in "${ED}"/usr/$(get_libdir)/*; do
+ [ $(basename $i) = petscdir ] && continue
+ ln -s "${EPREFIX}/usr/$(get_libdir)/$(basename $i)" \
+ "${ED}/usr/$(get_libdir)/petscdir/lib/$(basename $i)"
|| die "ln failed (petscdir)"
+ done
+ ln -s "${EPREFIX}"/usr/include/petsc/ \
+ "${ED}/usr/$(get_libdir)/petscdir/include" || die "ln failed
(petscdir)"
+ mkdir "${ED}/usr/$(get_libdir)/petscdir/share" || die "mkdir fialed
(petscdir)"
+ ln -s "${EPREFIX}"/usr/share/petsc/ \
+ "${ED}/usr/$(get_libdir)/petscdir/share/petsc" || die "ln
failed (petscdir)"
+
+ # automatically symlink petsc matlab modules:
+ mkdir -p "${ED}"/usr/share/octave/site/m/
+ ln -s "${EPREFIX}"/usr/share/petsc/matlab
"${ED}"/usr/share/octave/site/m/petsc || die "ln failed (matlab)"
+
+ if use examples; then
+ mkdir -p "${ED}"/usr/share/doc/${PF} || die "mkdir failed
(examples)"
+ mv "${ED}"/usr/share/petsc/examples "${ED}"/usr/share/doc/${PF}
|| die "mv failed (examples)"
+ ln -s "${EPREFIX}"/usr/share/doc/${PF}/examples
"${ED}"/usr/share/petsc/examples || die "ln failed (examples)"
+ docompress -x /usr/share/doc/${PF}/examples
+ else
+ rm -r "${ED}"/usr/share/petsc/examples || die "rm failed
(examples)"
+ fi
+
+ # add PETSC_DIR to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petscdir
+ EOF
+ doenvd 99petsc
+}
