commit: a738cfecfe6f21ce2e29d0df6d77dbddc6632497 Author: Eli Schwartz <eschwartz <AT> gentoo <DOT> org> AuthorDate: Tue Aug 5 15:31:15 2025 +0000 Commit: Eli Schwartz <eschwartz <AT> gentoo <DOT> org> CommitDate: Tue Aug 5 19:53:32 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a738cfec
sci-biology/hmmer: use dot-a.eclass ... to avoid installing broken static libraries w/ LTO. Closes: https://bugs.gentoo.org/958379 Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org> sci-biology/hmmer/hmmer-2.3.2-r6.ebuild | 8 ++++++-- sci-biology/hmmer/hmmer-3.1_beta2-r1.ebuild | 7 +++++-- 2 files changed, 11 insertions(+), 4 deletions(-) diff --git a/sci-biology/hmmer/hmmer-2.3.2-r6.ebuild b/sci-biology/hmmer/hmmer-2.3.2-r6.ebuild index 74a8a151b0c4..7766710967f5 100644 --- a/sci-biology/hmmer/hmmer-2.3.2-r6.ebuild +++ b/sci-biology/hmmer/hmmer-2.3.2-r6.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2024 Gentoo Authors +# Copyright 1999-2025 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -inherit flag-o-matic toolchain-funcs +inherit dot-a flag-o-matic toolchain-funcs DESCRIPTION="Sequence analysis using profile hidden Markov models" HOMEPAGE="http://hmmer.org/"; @@ -27,6 +27,8 @@ src_configure() { # required to expose pthread_setconcurrency(), #882279 append-cppflags -D_XOPEN_SOURCE=500 + lto-guarantee-fat + # prevent stray environmental variable # from causing issues in the test phase unset TMPDIR @@ -53,6 +55,8 @@ src_install() { insinto /usr/include/hmmer2 doins squid/*.h + strip-lto-bytecode + dodoc NOTES Userguide.pdf newdoc 00README README diff --git a/sci-biology/hmmer/hmmer-3.1_beta2-r1.ebuild b/sci-biology/hmmer/hmmer-3.1_beta2-r1.ebuild index 666d21cd5532..22c366c1454e 100644 --- a/sci-biology/hmmer/hmmer-3.1_beta2-r1.ebuild +++ b/sci-biology/hmmer/hmmer-3.1_beta2-r1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2025 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -inherit toolchain-funcs +inherit dot-a toolchain-funcs MY_PV="${PV/_beta/b}" @@ -33,6 +33,8 @@ src_configure() { # make build verbose, bug #429308 export V=1 + lto-guarantee-fat + econf \ --disable-pic \ --enable-threads \ @@ -48,6 +50,7 @@ src_compile() { src_install() { default + strip-lto-bytecode dodoc Userguide.pdf insinto /usr/share/hmmer
