commit: 173ffd3db4e08a1f2f00e767679638157fa58695 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sat Nov 29 13:17:11 2025 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Sat Nov 29 13:17:11 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=173ffd3d
sci-biology/samtools: drop 1.19.2, 1.21 Signed-off-by: David Seifert <soap <AT> gentoo.org> sci-biology/samtools/Manifest | 2 -- sci-biology/samtools/samtools-1.19.2.ebuild | 47 ----------------------------- sci-biology/samtools/samtools-1.21.ebuild | 47 ----------------------------- 3 files changed, 96 deletions(-) diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index 37df537b06b8..0a2373a0585a 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,4 +1,2 @@ -DIST samtools-1.19.2.tar.bz2 9150483 BLAKE2B fb845b2ccd61f1731ef4cdc180f4b9a4ac75e8c73c1ceaa9409b99e8052ca66b88c73fc71fd1067942aa24964f6df8dcb2d93631e5757e0cc200d7a3b9fad461 SHA512 c08d729fed21112855e0acc9cf7f29c7670d38a02ad6b0f2e9b9ef15a18f07e3e194cc4f6913481c98cd3e85dd4dc975dac96155b892da58bbe8ea3679a5270f DIST samtools-1.20.tar.bz2 9179938 BLAKE2B b534e659899a822e191c779a6ce9247854036da3435a0b63748783edc96d610ff0f02f73bbb5c1eab3ff86dbcca331113f3312a7c3376141ef89b6a8684446e4 SHA512 8526286243d057758cb846311d0a8c728026d31438e87fcc03e0df576f33bcc6da0e18bce141dbdc438a116341c94aa92701cdf10ba6b1301eadedbb34120822 -DIST samtools-1.21.tar.bz2 9149284 BLAKE2B f4e0b155b0bc8aaea81835e751d94c121f6256340e2db3a809d1ee46bed16168a0fb43d9359bf4c3967d0b77ab1151e105107c47eb0481a2c49414ffd5f1faa2 SHA512 4f80a4333ebb4dc0eb5f38f29474424b1acca9b677aa206b111c7a638b8ae924ab2dcdc9de15eb1b849576d0158579a476a7b78ccd73e7d2baafc3bbb88c6103 DIST samtools-1.22.tar.bz2 9292743 BLAKE2B 74805efe6035d4987762c5d9c5fc1ede217f8c67e1778767c2e611c0844639149c73b7cef40649212ba3dcd11f089d0ede91f6127df31433d4e33c8f22378b93 SHA512 8bb4d68ac5f819d6e175f43d8719402f17636b958ed016a943dc6c1971704f405908562ff9fe8f3c7c8725f729057024b305a6ca428a09be8b1e63a1df1cd578 diff --git a/sci-biology/samtools/samtools-1.19.2.ebuild b/sci-biology/samtools/samtools-1.19.2.ebuild deleted file mode 100644 index 8f07dd8cd7e5..000000000000 --- a/sci-biology/samtools/samtools-1.19.2.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2025 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" -HOMEPAGE="http://www.htslib.org/"; -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"; - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" - -RDEPEND=" - dev-lang/perl - =sci-libs/htslib-$(ver_cut 1-2)*:= - sys-libs/ncurses:=[unicode(+)] - virtual/zlib:=" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -src_prepare() { - default - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --with-ncurses \ - --with-htslib=system \ - CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)" -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples -} diff --git a/sci-biology/samtools/samtools-1.21.ebuild b/sci-biology/samtools/samtools-1.21.ebuild deleted file mode 100644 index 8f07dd8cd7e5..000000000000 --- a/sci-biology/samtools/samtools-1.21.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2025 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" -HOMEPAGE="http://www.htslib.org/"; -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"; - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" - -RDEPEND=" - dev-lang/perl - =sci-libs/htslib-$(ver_cut 1-2)*:= - sys-libs/ncurses:=[unicode(+)] - virtual/zlib:=" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -src_prepare() { - default - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --with-ncurses \ - --with-htslib=system \ - CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)" -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples -}
