commit: b7e4b1db6e30e8b3b2709b3e717b5af35b2a9696 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Mon Dec 1 10:26:26 2025 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Mon Dec 1 10:26:26 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b7e4b1db
sci-biology/biogrep: fix c23 pointer declarations Closes: https://bugs.gentoo.org/944932 Signed-off-by: David Seifert <soap <AT> gentoo.org> sci-biology/biogrep/biogrep-1.0-r3.ebuild | 4 ++- sci-biology/biogrep/files/biogrep-1.0-c23.patch | 35 +++++++++++++++++++++++++ 2 files changed, 38 insertions(+), 1 deletion(-) diff --git a/sci-biology/biogrep/biogrep-1.0-r3.ebuild b/sci-biology/biogrep/biogrep-1.0-r3.ebuild index 74019b09fb6b..cfdeeb440f72 100644 --- a/sci-biology/biogrep/biogrep-1.0-r3.ebuild +++ b/sci-biology/biogrep/biogrep-1.0-r3.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2025 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 @@ -16,6 +16,8 @@ SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="doc examples" +PATCHES=( "${FILESDIR}"/${P}-c23.patch ) + src_prepare() { default eautoreconf diff --git a/sci-biology/biogrep/files/biogrep-1.0-c23.patch b/sci-biology/biogrep/files/biogrep-1.0-c23.patch new file mode 100644 index 000000000000..a287dd905b48 --- /dev/null +++ b/sci-biology/biogrep/files/biogrep-1.0-c23.patch @@ -0,0 +1,35 @@ +--- a/src/main.c ++++ b/src/main.c +@@ -198,8 +198,8 @@ + int i; + int regExsPerThread; + int completedRegExs; +- int (*parseFunct) () = &ParseTxtLine; +- fSeq_t *(*seqReadFunct) () = &ReadTxtSeqs; ++ int (*parseFunct) (char*, int, tPat_t*) = &ParseTxtLine; ++ fSeq_t *(*seqReadFunct) (FILE*, int*) = &ReadTxtSeqs; + printFormat_t myFormat; + int ignoreCase = 0; + +--- a/src/patternFunctions.c ++++ b/src/patternFunctions.c +@@ -39,7 +39,7 @@ + // output file from Teiresias, which may or may not have logOdds values + // + tPat_t * +-ReadTPats(FILE * INPUT, int getOffsets, int *numberOfPatterns, int (*parseFunct) ()) ++ReadTPats(FILE * INPUT, int getOffsets, int *numberOfPatterns, int (*parseFunct) (char*, int, tPat_t*)) + { + int i; + int countedPatterns; +--- a/src/patternFunctions.h ++++ b/src/patternFunctions.h +@@ -33,7 +33,7 @@ + int MeasurePattern(char *pattern); + int ParseTPatLine(char *buffer, int getOffsets, tPat_t * myTeiresiasPattern); + int ParseTxtLine(char *buffer, int getOffsets, tPat_t * myTeiresiasPattern); +-tPat_t *ReadTPats(FILE * INPUT, int getOffsets, int *numberOfPatterns, int (*parseFunct)() ); ++tPat_t *ReadTPats(FILE * INPUT, int getOffsets, int *numberOfPatterns, int (*parseFunct)(char*, int, tPat_t*) ); + int printTPat(FILE * OUTPUT, tPat_t * myTeiresiasPattern, int hasOffsets); + int FreeTPatA(tPat_t * arrayOfTeiresiasPatterns, int numberOfPatterns); +
