commit: a9c81628eca87f9cc79d8441dce83f7f0e9d68fd Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Tue Mar 31 10:52:01 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Wed Apr 1 06:16:35 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a9c81628
Moved to tree Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/allpathslg/ChangeLog | 80 -------------------------- sci-biology/allpathslg/allpathslg-52415.ebuild | 40 ------------- sci-biology/allpathslg/metadata.xml | 5 -- 3 files changed, 125 deletions(-) diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog deleted file mode 100644 index 41ef438..0000000 --- a/sci-biology/allpathslg/ChangeLog +++ /dev/null @@ -1,80 +0,0 @@ -# ChangeLog for sci-biology/allpathslg -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.16 2013/11/13 02:34:46 patrick Exp $ - - 30 Mar 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> - allpathslg-52415.ebuild: - sci-biology/allpathslg: noted another home-like web page - - 13 Nov 2013; Patrick Lauer <patr...@gentoo.org> allpathslg-42337.ebuild, - allpathslg-47093.ebuild: - Removing x86 keyword as dependency sci-biology/vaal does not work on x86 - -*allpathslg-47093 (17 Jul 2013) - - 17 Jul 2013; Justin Lecher <j...@gentoo.org> allpathslg-42337.ebuild, - +allpathslg-47093.ebuild: - Version Bump - - 11 Mar 2013; Justin Lecher <j...@gentoo.org> metadata.xml: - Drop Andrey as maintainer so that bugs get assigned to sci-biology directly - - 20 Feb 2013; Justin Lecher <j...@gentoo.org> -allpathslg-37578.ebuild: - Drop old - - 20 Feb 2013; Agostino Sarubbo <a...@gentoo.org> allpathslg-42337.ebuild: - Stable for amd64, wrt bug #458106 - - 18 Feb 2013; Justin Lecher <j...@gentoo.org> -allpathslg-41839.ebuild, - metadata.xml: - Drop old - - 14 Dec 2012; Ulrich Müller <u...@gentoo.org> allpathslg-37578.ebuild, - allpathslg-41839.ebuild, allpathslg-42337.ebuild: - Fix LICENSE, MIT (Expat) according to COPYING file. - - 19 Nov 2012; Justin Lecher <j...@gentoo.org> allpathslg-37578.ebuild, - allpathslg-41839.ebuild, allpathslg-42337.ebuild: - Block sci-biology/allpaths due to file collision, #443740 - -*allpathslg-42337 (09 Jul 2012) - - 09 Jul 2012; Justin Lecher <j...@gentoo.org> +allpathslg-42337.ebuild: - Version bump, fix compilation errors with gcc-4.7, #425472 - -*allpathslg-41839 (29 May 2012) - - 29 May 2012; Andrey Kislyuk <wea...@gentoo.org> -allpathslg-38573.ebuild, - -allpathslg-40063.ebuild, +allpathslg-41839.ebuild: - version bump - -*allpathslg-40063 (28 Dec 2011) - - 28 Dec 2011; Andrey Kislyuk <wea...@gentoo.org> - -allpathslg-35725-r1.ebuild, +allpathslg-40063.ebuild: - Version bump, remove old - - 15 Oct 2011; Markos Chandras <hwoar...@gentoo.org> allpathslg-37578.ebuild: - Stable on amd64 wrt bug #384379 - -*allpathslg-38573 (25 Sep 2011) - - 25 Sep 2011; Andrey Kislyuk <wea...@gentoo.org> +allpathslg-38573.ebuild: - Version bump - -*allpathslg-37578 (20 Jun 2011) - - 20 Jun 2011; Andrey Kislyuk <wea...@gentoo.org> +allpathslg-37578.ebuild: - Version bump - -*allpathslg-35725-r1 (27 Jan 2011) - - 27 Jan 2011; Andrey Kislyuk <wea...@gentoo.org> -allpathslg-35725.ebuild, - +allpathslg-35725-r1.ebuild: - Drop ~x86, avoid collision with sci-biology/vaal - -*allpathslg-35725 (25 Jan 2011) - - 25 Jan 2011; Andrey Kislyuk <wea...@gentoo.org> +allpathslg-35725.ebuild, - +metadata.xml: - Package move from sci-biology/allpaths and version bump diff --git a/sci-biology/allpathslg/allpathslg-52415.ebuild b/sci-biology/allpathslg/allpathslg-52415.ebuild deleted file mode 100644 index ff7bdca..0000000 --- a/sci-biology/allpathslg/allpathslg-52415.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v 1.6 2013/11/13 02:34:46 patrick Exp $ - -EAPI=4 - -inherit autotools flag-o-matic - -DESCRIPTION="De novo assembly of whole-genome shotgun microreads" -# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12 -HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"; -SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"; - -LICENSE="MIT" -SLOT="0" -IUSE="" -KEYWORDS="~amd64" - -# as of release 44849, GCC 4.7.0 (or higher) is required -# seems pre gcc-4.7 users must stay with: -# ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz -DEPEND=" - >=sys-devel/gcc-4.7 - dev-libs/boost - !sci-biology/allpaths - sci-biology/vaal" -RDEPEND="" - -src_prepare() { - sed -i 's/-ggdb3//' configure.ac || die - eautoreconf -} - -src_install() { - einstall || die - # Provided by sci-biology/vaal - for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do - rm "${D}/usr/bin/$i" || die - done -} diff --git a/sci-biology/allpathslg/metadata.xml b/sci-biology/allpathslg/metadata.xml deleted file mode 100644 index f17a827..0000000 --- a/sci-biology/allpathslg/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <herd>sci-biology</herd> -</pkgmetadata>
