commit: df363e30c8033d85992c787537f5864836ebf4b4 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue May 5 14:29:02 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue May 5 14:29:02 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=df363e30
sci-biology/Jannovar-bin: new package Package-Manager: portage-2.2.18 sci-biology/Jannovar-bin/ChangeLog | 9 +++++++ .../Jannovar-bin/Jannovar-bin-20150503.ebuild | 30 ++++++++++++++++++++++ sci-biology/Jannovar-bin/metadata.xml | 9 +++++++ 3 files changed, 48 insertions(+) diff --git a/sci-biology/Jannovar-bin/ChangeLog b/sci-biology/Jannovar-bin/ChangeLog new file mode 100644 index 0000000..5a6ec92 --- /dev/null +++ b/sci-biology/Jannovar-bin/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/Jannovar-bin +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*Jannovar-bin-20150503 (05 May 2015) + + 05 May 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +Jannovar-bin-20150503.ebuild, +metadata.xml: + sci-biology/Jannovar-bin: new package diff --git a/sci-biology/Jannovar-bin/Jannovar-bin-20150503.ebuild b/sci-biology/Jannovar-bin/Jannovar-bin-20150503.ebuild new file mode 100644 index 0000000..890494a --- /dev/null +++ b/sci-biology/Jannovar-bin/Jannovar-bin-20150503.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit java-pkg-2 + +DESCRIPTION="Exome annotation tool" +HOMEPAGE="http://compbio.charite.de/contao/index.php/jannovar.html"; +SRC_URI="http://compbio.charite.de/contao/index.php/jannovar.html?file=tl_files/Jannovar/Jannovar.jar -> Jannovar-bin-20150503.jar + http://compbio.charite.de/contao/index.php/jannovar.html?file=tl_files/Jannovar/JannovarTutorial.pdf -> JannovarTutorial.pdf + http://compbio.charite.de/contao/index.php/jannovar.html?file=tl_files/Jannovar/tutorial.tgz -> Jannovar_tutorial.tgz" + +# https://github.com/charite/jannovar +LICENSE="BSD-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=">=virtual/jdk-1.7" +RDEPEND=">=virtual/jre-1.7" + +S="${WORKDIR}" + +src_install(){ + cp "${DISTDIR}"/Jannovar-bin-20150503.jar Jannovar-bin.jar + java-pkg_newjar Jannovar-bin.jar + java-pkg_dolauncher Jannovar-bin --jar Jannovar-bin.jar +} diff --git a/sci-biology/Jannovar-bin/metadata.xml b/sci-biology/Jannovar-bin/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/Jannovar-bin/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
