commit: 2bd8167c9b0bea828111da63404724d0667cfbf3 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue May 5 15:10:02 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue May 5 15:10:02 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2bd8167c
sci-biology/barnacle: a skeleton of a messy package Package-Manager: portage-2.2.18 sci-biology/barnacle/ChangeLog | 9 +++++++ sci-biology/barnacle/barnacle-1.0.3.ebuild | 39 ++++++++++++++++++++++++++++++ sci-biology/barnacle/metadata.xml | 9 +++++++ 3 files changed, 57 insertions(+) diff --git a/sci-biology/barnacle/ChangeLog b/sci-biology/barnacle/ChangeLog new file mode 100644 index 0000000..7d5b981 --- /dev/null +++ b/sci-biology/barnacle/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/barnacle +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*barnacle-1.0.3 (05 May 2015) + + 05 May 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +barnacle-1.0.3.ebuild, +metadata.xml: + sci-biology/barnacle: a skeleton of a messy package diff --git a/sci-biology/barnacle/barnacle-1.0.3.ebuild b/sci-biology/barnacle/barnacle-1.0.3.ebuild new file mode 100644 index 0000000..de565f3 --- /dev/null +++ b/sci-biology/barnacle/barnacle-1.0.3.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Check de novo assembly for chimeric contigs/transcripts" +HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/barnacle"; +#SRC_URI="http://www.bcgsc.ca/platform/bioinfo/software/barnacle/releases/1.0.0/"${P}".tar.gz"; +SRC_URI="http://www.bcgsc.ca/platform/bioinfo/software/barnacle/releases/${PV}/${P}.tar.gz"; +# ftp://ftp.bcgsc.ca/supplementary/Barnacle_BMC_Genomics/aml_data.tar.gz +# http://www.bcgsc.ca/platform/bioinfo/software/barnacle/releases/1.0.3 + +LICENSE="bcca_2010" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${S}" + +# follow README.txt +src_compile(){ + cd src || die + # Run setup.py to compile the portions of Barnacle that require compilation, and download and setup the default annotations + ./setup.py || die +} + +src_install(){ + dodoc README.txt + cd src || die + # do something +} diff --git a/sci-biology/barnacle/metadata.xml b/sci-biology/barnacle/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/barnacle/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
