commit: a2fff58ef4b54fde37926e16f080d7cd781d9f0a Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Mon Sep 21 13:56:02 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Mon Sep 21 13:56:02 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a2fff58e
Drop obsolete package Sources unavailable Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-chemistry/almost/ChangeLog | 21 --- sci-chemistry/almost/almost-1.0.3-r2.ebuild | 67 -------- sci-chemistry/almost/files/Makefile.patch | 44 ------ sci-chemistry/almost/files/configure.patch | 226 -------------------------- sci-chemistry/almost/files/configure2.patch | 235 ---------------------------- sci-chemistry/almost/files/gcc-4.3.patch | 70 --------- sci-chemistry/almost/metadata.xml | 9 -- 7 files changed, 672 deletions(-) diff --git a/sci-chemistry/almost/ChangeLog b/sci-chemistry/almost/ChangeLog deleted file mode 100644 index 206d8c1..0000000 --- a/sci-chemistry/almost/ChangeLog +++ /dev/null @@ -1,21 +0,0 @@ -# ChangeLog for sci-chemistry/almost -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Id$ - - 10 Nov 2014; Justin Lecher <j...@gentoo.org> almost-1.0.3-r2.ebuild: - Bump to EAPI=5 - -*almost-1.0.3-r1 (11 May 2009) - - 11 May 2009; Justin Lecher (jlec) <j...@j-schmitz.net> - +almost-1.0.3-r1.ebuild: - make use of boost-1.3.6 - Use updated code from upstream - - 15 Feb 2009; justin Lecher (jlec) <j...@j-schmitz.net> - Fixed installation of missing headers - - 07 Nov 2008; justin Lecher <j...@j-schmitz.net> +metadata.xml, - +almost-1.0.3.ebuild: - Setup sci-chemistry/almost - diff --git a/sci-chemistry/almost/almost-1.0.3-r2.ebuild b/sci-chemistry/almost/almost-1.0.3-r2.ebuild deleted file mode 100644 index 0ea8c53..0000000 --- a/sci-chemistry/almost/almost-1.0.3-r2.ebuild +++ /dev/null @@ -1,67 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit autotools eutils flag-o-matic - -DATE="090822" - -DESCRIPTION="all atom molecular simulation toolkit" -HOMEPAGE="http://www-almost.ch.cam.ac.uk/site"; -#SRC_URI="http://www-almost.ch.cam.ac.uk/site/downloads/${P}.tar.gz"; -## Upstream changes tarballs w/o revision bump so I host a copy -SRC_URI="http://dev.gentooexperimental.org/~jlec/distfiles/${P}-${DATE}.tar.gz"; -LICENSE="GPL-2" - -SLOT="0" -KEYWORDS="~amd64 ~x86" - -IUSE="" -RDEPEND="" - -## dev-libs/boost-1.3.6, once it is in the tree soft masked -## until then we use the shipped one -# Upstream has to fix its code so that it compiles with mpicxx -## Upstream only uses sys-cluster/mpich2, so we should first get this to work. -#DEPEND="mpi? ( sys-cluster/mpich2 )" -DEPEND="${RDEPEND}" - -RESTRICT="mirror" - -src_prepare(){ - rm -rf ./include/almost/boost src/lib/iostreams || die -# rm -rf ./include/almost/boost ./include/almost/boost_1_30 #src/lib/iostreams - - sed -e 's:boost boost_1_30::g' \ - -i ./include/almost/Makefile.am || die - - epatch \ - "${FILESDIR}"/configure2.patch \ - "${FILESDIR}"/Makefile.patch - - sed \ - -e '/include\/almost\/boost/d' \ - -e '/include\/almost\/tinyxml/d' \ - -i configure.in || die - -# find include \ -# -name "*.h" \ -# -exec sed 's:boost_1_30:boost:g' -i '{}' \; - - epatch "${FILESDIR}"/gcc-4.3.patch - eautoreconf -} - -src_compile(){ - emake CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" -j1 - -} - -src_install() { - default - - insinto /usr/include/${PN} - doins {almost,config}.h -} diff --git a/sci-chemistry/almost/files/Makefile.patch b/sci-chemistry/almost/files/Makefile.patch deleted file mode 100644 index cdaf0aa..0000000 --- a/sci-chemistry/almost/files/Makefile.patch +++ /dev/null @@ -1,44 +0,0 @@ ---- src/Makefile.am 2008-06-06 01:15:31.000000000 +0200 -+++ src/Makefile.am.new 2009-08-22 22:38:00.000000000 +0200 -@@ -1,3 +1,3 @@ - #SUBDIRS = #io param pdb molecules util moveset system forcefield zeta mpi dcdtools analysis modules tests - --SUBDIRS= lib tinyxml libxml forcefield examples tests -+SUBDIRS= lib forcefield examples tests ---- src/lib/Makefile.am 2008-07-17 17:57:14.000000000 +0200 -+++ src/lib/Makefile.am.new 2009-08-23 20:45:00.000000000 +0200 -@@ -1,6 +1,7 @@ - INCLUDES = -I../../include/almost -I../rose -I../zeta/ -Imodules - SUBDIRS=modules - lib_LIBRARIES=libAlm.a -+libAlm_la_LIBADD=libboost_iostreams.a - REGEXSOURCES= regex/c_regex_traits.cpp \ - regex/cpp_regex_traits.cpp \ - regex/cregex.cpp \ -@@ -19,15 +20,6 @@ - regex/wide_posix_api.cpp \ - regex/winstances.cpp - --IOSTREAMSSOURCES = iostreams/bzip2.cpp \ -- iostreams/file_descriptor.cpp \ -- iostreams/mapped_file.cpp \ -- iostreams/zlib.cpp -- --IOSOURCES = io/formostream.cpp -- -- -- - PBDSOURCES = pdb/pdbatomline.cpp \ - pdb/pdbauthorline.cpp \ - pdb/pdbcompndline.cpp \ -@@ -208,8 +200,8 @@ - - - --nodist_libAlm_a_SOURCES= $(REGEXSOURCES) $(PBDSOURCES) $(IOSTREAMSSOURCES) \ -- $(IOSOURCES) $(MDBSOUCES) $(MOLECULESSOURCES) \ -+nodist_libAlm_a_SOURCES= $(REGEXSOURCES) $(PBDSOURCES) \ -+ $(MDBSOUCES) $(MOLECULESSOURCES) \ - $(MOVESETSOURCES) $(DCDTOOLSSOURCES) $(ALGOSOURCES) \ - $(MODSOURCES) $(CODE) $(ZETASOURCES) $(CHESHIRESOURCES) - diff --git a/sci-chemistry/almost/files/configure.patch b/sci-chemistry/almost/files/configure.patch deleted file mode 100644 index c8e2719..0000000 --- a/sci-chemistry/almost/files/configure.patch +++ /dev/null @@ -1,226 +0,0 @@ ---- configure.in 2008-06-18 11:53:20.000000000 +0200 -+++ configure.in.new 2009-08-22 22:07:07.000000000 +0200 -@@ -125,10 +125,6 @@ - fi - - --#C and CPPFLAFS --CFLAGS="-O9 -ffast-math -fomit-frame-pointer" --CXXFLAGS="-O9 -ffast-math" -- - #alm_sse - mkasm=false - case "${host-cpu}" in -@@ -224,203 +220,6 @@ - version.h - Makefile - include/almost/algorithm/Makefile -- include/almost/boost/algorithm/Makefile -- include/almost/boost/algorithm/string/detail/Makefile -- include/almost/boost/algorithm/string/Makefile -- include/almost/boost/algorithm/string/std/Makefile -- include/almost/boost/archive/detail/Makefile -- include/almost/boost/archive/impl/Makefile -- include/almost/boost/archive/iterators/Makefile -- include/almost/boost/archive/Makefile -- include/almost/boost/assign/Makefile -- include/almost/boost/assign/std/Makefile -- include/almost/boost/bind/Makefile -- include/almost/boost/compatibility/cpp_c_headers/Makefile -- include/almost/boost/compatibility/Makefile -- include/almost/boost/config/abi/Makefile -- include/almost/boost/config/compiler/Makefile -- include/almost/boost/config/Makefile -- include/almost/boost/config/platform/Makefile -- include/almost/boost/config/stdlib/Makefile -- include/almost/boost/date_time/gregorian/Makefile -- include/almost/boost/date_time/local_time/Makefile -- include/almost/boost/date_time/Makefile -- include/almost/boost/date_time/posix_time/Makefile -- include/almost/boost/detail/Makefile -- include/almost/boost/dynamic_bitset/Makefile -- include/almost/boost/filesystem/Makefile -- include/almost/boost/format/detail/Makefile -- include/almost/boost/format/Makefile -- include/almost/boost/function/detail/Makefile -- include/almost/boost/function/Makefile -- include/almost/boost/functional/detail/Makefile -- include/almost/boost/functional/hash/Makefile -- include/almost/boost/functional/Makefile -- include/almost/boost/graph/detail/Makefile -- include/almost/boost/graph/Makefile -- include/almost/boost/integer/Makefile -- include/almost/boost/io/Makefile -- include/almost/boost/iostreams/detail/adapter/Makefile -- include/almost/boost/iostreams/detail/broken_overload_resolution/Makefile -- include/almost/boost/iostreams/detail/config/Makefile -- include/almost/boost/iostreams/detail/Makefile -- include/almost/boost/iostreams/detail/streambuf/Makefile -- include/almost/boost/iostreams/detail/vc6/Makefile -- include/almost/boost/iostreams/device/Makefile -- include/almost/boost/iostreams/filter/Makefile -- include/almost/boost/iostreams/Makefile -- include/almost/boost/iterator/detail/Makefile -- include/almost/boost/iterator/Makefile -- include/almost/boost/lambda/detail/Makefile -- include/almost/boost/lambda/Makefile -- include/almost/boost/logic/Makefile -- include/almost/boost/Makefile -- include/almost/boost/math/Makefile -- include/almost/boost/math/special_functions/Makefile -- include/almost/boost/mpl/aux_/config/Makefile -- include/almost/boost/mpl/aux_/Makefile -- include/almost/boost/mpl/aux_/preprocessed/bcc/Makefile -- include/almost/boost/mpl/aux_/preprocessed/bcc551/Makefile -- include/almost/boost/mpl/aux_/preprocessed/dmc/Makefile -- include/almost/boost/mpl/aux_/preprocessed/gcc/Makefile -- include/almost/boost/mpl/aux_/preprocessed/Makefile -- include/almost/boost/mpl/aux_/preprocessed/msvc60/Makefile -- include/almost/boost/mpl/aux_/preprocessed/msvc70/Makefile -- include/almost/boost/mpl/aux_/preprocessed/mwcw/Makefile -- include/almost/boost/mpl/aux_/preprocessed/no_ctps/Makefile -- include/almost/boost/mpl/aux_/preprocessed/no_ttp/Makefile -- include/almost/boost/mpl/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/aux_/preprocessor/Makefile -- include/almost/boost/mpl/aux_/range_c/Makefile -- include/almost/boost/mpl/aux_/test/Makefile -- include/almost/boost/mpl/limits/Makefile -- include/almost/boost/mpl/list/aux_/Makefile -- include/almost/boost/mpl/list/aux_/preprocessed/Makefile -- include/almost/boost/mpl/list/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/list/Makefile -- include/almost/boost/mpl/Makefile -- include/almost/boost/mpl/map/aux_/Makefile -- include/almost/boost/mpl/map/aux_/preprocessed/Makefile -- include/almost/boost/mpl/map/aux_/preprocessed/no_ctps/Makefile -- include/almost/boost/mpl/map/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/map/aux_/preprocessed/typeof_based/Makefile -- include/almost/boost/mpl/map/Makefile -- include/almost/boost/mpl/math/Makefile -- include/almost/boost/mpl/multiset/aux_/Makefile -- include/almost/boost/mpl/multiset/Makefile -- include/almost/boost/mpl/set/aux_/Makefile -- include/almost/boost/mpl/set/aux_/preprocessed/Makefile -- include/almost/boost/mpl/set/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/set/Makefile -- include/almost/boost/mpl/vector/aux_/Makefile -- include/almost/boost/mpl/vector/aux_/preprocessed/Makefile -- include/almost/boost/mpl/vector/aux_/preprocessed/no_ctps/Makefile -- include/almost/boost/mpl/vector/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/vector/aux_/preprocessed/typeof_based/Makefile -- include/almost/boost/mpl/vector/Makefile -- include/almost/boost/multi_array/Makefile -- include/almost/boost/multi_index/detail/Makefile -- include/almost/boost/multi_index/Makefile -- include/almost/boost/numeric/conversion/detail/Makefile -- include/almost/boost/numeric/conversion/Makefile -- include/almost/boost/numeric/interval/compare/Makefile -- include/almost/boost/numeric/interval/detail/Makefile -- include/almost/boost/numeric/interval/ext/Makefile -- include/almost/boost/numeric/interval/Makefile -- include/almost/boost/numeric/Makefile -- include/almost/boost/numeric/ublas/detail/Makefile -- include/almost/boost/numeric/ublas/Makefile -- include/almost/boost/optional/Makefile -- include/almost/boost/parameter/aux_/Makefile -- include/almost/boost/parameter/Makefile -- include/almost/boost/pending/detail/Makefile -- include/almost/boost/pending/Makefile -- include/almost/boost/pool/detail/Makefile -- include/almost/boost/pool/Makefile -- include/almost/boost/preprocessor/arithmetic/detail/Makefile -- include/almost/boost/preprocessor/arithmetic/Makefile -- include/almost/boost/preprocessor/array/Makefile -- include/almost/boost/preprocessor/comparison/Makefile -- include/almost/boost/preprocessor/config/Makefile -- include/almost/boost/preprocessor/control/detail/dmc/Makefile -- include/almost/boost/preprocessor/control/detail/edg/Makefile -- include/almost/boost/preprocessor/control/detail/Makefile -- include/almost/boost/preprocessor/control/detail/msvc/Makefile -- include/almost/boost/preprocessor/control/Makefile -- include/almost/boost/preprocessor/debug/Makefile -- include/almost/boost/preprocessor/detail/dmc/Makefile -- include/almost/boost/preprocessor/detail/Makefile -- include/almost/boost/preprocessor/facilities/Makefile -- include/almost/boost/preprocessor/iteration/detail/bounds/Makefile -- include/almost/boost/preprocessor/iteration/detail/iter/Makefile -- include/almost/boost/preprocessor/iteration/detail/Makefile -- include/almost/boost/preprocessor/iteration/Makefile -- include/almost/boost/preprocessor/list/detail/dmc/Makefile -- include/almost/boost/preprocessor/list/detail/edg/Makefile -- include/almost/boost/preprocessor/list/detail/Makefile -- include/almost/boost/preprocessor/list/Makefile -- include/almost/boost/preprocessor/logical/Makefile -- include/almost/boost/preprocessor/Makefile -- include/almost/boost/preprocessor/punctuation/Makefile -- include/almost/boost/preprocessor/repetition/detail/dmc/Makefile -- include/almost/boost/preprocessor/repetition/detail/edg/Makefile -- include/almost/boost/preprocessor/repetition/detail/Makefile -- include/almost/boost/preprocessor/repetition/detail/msvc/Makefile -- include/almost/boost/preprocessor/repetition/Makefile -- include/almost/boost/preprocessor/selection/Makefile -- include/almost/boost/preprocessor/seq/detail/Makefile -- include/almost/boost/preprocessor/seq/Makefile -- include/almost/boost/preprocessor/slot/detail/Makefile -- include/almost/boost/preprocessor/slot/Makefile -- include/almost/boost/preprocessor/tuple/Makefile -- include/almost/boost/program_options/detail/Makefile -- include/almost/boost/program_options/Makefile -- include/almost/boost/ptr_container/detail/Makefile -- include/almost/boost/ptr_container/Makefile -- include/almost/boost/python/converter/Makefile -- include/almost/boost/python/detail/Makefile -- include/almost/boost/python/Makefile -- include/almost/boost/python/object/Makefile -- include/almost/boost/python/suite/indexing/detail/Makefile -- include/almost/boost/python/suite/indexing/Makefile -- include/almost/boost/python/suite/Makefile -- include/almost/boost/random/detail/Makefile -- include/almost/boost/random/Makefile -- include/almost/boost/range/detail/Makefile -- include/almost/boost/range/detail/mfc/Makefile -- include/almost/boost/range/detail/vc6/Makefile -- include/almost/boost/range/Makefile -- include/almost/boost/regex/config/Makefile -- include/almost/boost/regex/Makefile -- include/almost/boost/regex/pending/Makefile -- include/almost/boost/regex/v4/Makefile -- include/almost/boost/serialization/detail/Makefile -- include/almost/boost/serialization/Makefile -- include/almost/boost/signals/detail/Makefile -- include/almost/boost/signals/Makefile -- include/almost/boost/thread/detail/Makefile -- include/almost/boost/thread/Makefile -- include/almost/boost/tuple/detail/Makefile -- include/almost/boost/tuple/Makefile -- include/almost/boost/type_traits/detail/Makefile -- include/almost/boost/type_traits/Makefile -- include/almost/boost/utility/detail/Makefile -- include/almost/boost/utility/Makefile -- include/almost/boost/variant/detail/Makefile -- include/almost/boost/variant/Makefile -- include/almost/boost/wave/cpplexer/Makefile -- include/almost/boost/wave/cpplexer/re2clex/Makefile -- include/almost/boost/wave/grammars/Makefile -- include/almost/boost/wave/Makefile -- include/almost/boost/wave/util/Makefile -- include/almost/boost_1_30/config/compiler/Makefile -- include/almost/boost_1_30/config/Makefile -- include/almost/boost_1_30/config/platform/Makefile -- include/almost/boost_1_30/config/stdlib/Makefile -- include/almost/boost_1_30/detail/Makefile -- include/almost/boost_1_30/Makefile -- include/almost/boost_1_30/random/detail/Makefile -- include/almost/boost_1_30/random/Makefile - include/almost/coormanager/Makefile - include/almost/dyna/Makefile - include/almost/mcf/Makefile -@@ -470,8 +269,6 @@ - src/lib/Makefile - src/lib/modules/Makefile - src/Makefile -- src/tinyxml/Makefile -- src/libxml/Makefile - src/forcefield/Makefile - src/examples/Makefile - src/tests/Makefile diff --git a/sci-chemistry/almost/files/configure2.patch b/sci-chemistry/almost/files/configure2.patch deleted file mode 100644 index bf598ae..0000000 --- a/sci-chemistry/almost/files/configure2.patch +++ /dev/null @@ -1,235 +0,0 @@ ---- configure.in 2008-06-18 11:53:20.000000000 +0200 -+++ configure.in.new 2009-08-23 22:10:20.000000000 +0200 -@@ -124,11 +124,6 @@ - echo Constraint disabled value $ - fi - -- --#C and CPPFLAFS --CFLAGS="-O9 -ffast-math -fomit-frame-pointer" --CXXFLAGS="-O9 -ffast-math" -- - #alm_sse - mkasm=false - case "${host-cpu}" in -@@ -224,195 +219,6 @@ - version.h - Makefile - include/almost/algorithm/Makefile -- include/almost/boost/algorithm/Makefile -- include/almost/boost/algorithm/string/detail/Makefile -- include/almost/boost/algorithm/string/Makefile -- include/almost/boost/algorithm/string/std/Makefile -- include/almost/boost/archive/detail/Makefile -- include/almost/boost/archive/impl/Makefile -- include/almost/boost/archive/iterators/Makefile -- include/almost/boost/archive/Makefile -- include/almost/boost/assign/Makefile -- include/almost/boost/assign/std/Makefile -- include/almost/boost/bind/Makefile -- include/almost/boost/compatibility/cpp_c_headers/Makefile -- include/almost/boost/compatibility/Makefile -- include/almost/boost/config/abi/Makefile -- include/almost/boost/config/compiler/Makefile -- include/almost/boost/config/Makefile -- include/almost/boost/config/platform/Makefile -- include/almost/boost/config/stdlib/Makefile -- include/almost/boost/date_time/gregorian/Makefile -- include/almost/boost/date_time/local_time/Makefile -- include/almost/boost/date_time/Makefile -- include/almost/boost/date_time/posix_time/Makefile -- include/almost/boost/detail/Makefile -- include/almost/boost/dynamic_bitset/Makefile -- include/almost/boost/filesystem/Makefile -- include/almost/boost/format/detail/Makefile -- include/almost/boost/format/Makefile -- include/almost/boost/function/detail/Makefile -- include/almost/boost/function/Makefile -- include/almost/boost/functional/detail/Makefile -- include/almost/boost/functional/hash/Makefile -- include/almost/boost/functional/Makefile -- include/almost/boost/graph/detail/Makefile -- include/almost/boost/graph/Makefile -- include/almost/boost/integer/Makefile -- include/almost/boost/io/Makefile -- include/almost/boost/iostreams/detail/adapter/Makefile -- include/almost/boost/iostreams/detail/broken_overload_resolution/Makefile -- include/almost/boost/iostreams/detail/config/Makefile -- include/almost/boost/iostreams/detail/Makefile -- include/almost/boost/iostreams/detail/streambuf/Makefile -- include/almost/boost/iostreams/detail/vc6/Makefile -- include/almost/boost/iostreams/device/Makefile -- include/almost/boost/iostreams/filter/Makefile -- include/almost/boost/iostreams/Makefile -- include/almost/boost/iterator/detail/Makefile -- include/almost/boost/iterator/Makefile -- include/almost/boost/lambda/detail/Makefile -- include/almost/boost/lambda/Makefile -- include/almost/boost/logic/Makefile -- include/almost/boost/Makefile -- include/almost/boost/math/Makefile -- include/almost/boost/math/special_functions/Makefile -- include/almost/boost/mpl/aux_/config/Makefile -- include/almost/boost/mpl/aux_/Makefile -- include/almost/boost/mpl/aux_/preprocessed/bcc/Makefile -- include/almost/boost/mpl/aux_/preprocessed/bcc551/Makefile -- include/almost/boost/mpl/aux_/preprocessed/dmc/Makefile -- include/almost/boost/mpl/aux_/preprocessed/gcc/Makefile -- include/almost/boost/mpl/aux_/preprocessed/Makefile -- include/almost/boost/mpl/aux_/preprocessed/msvc60/Makefile -- include/almost/boost/mpl/aux_/preprocessed/msvc70/Makefile -- include/almost/boost/mpl/aux_/preprocessed/mwcw/Makefile -- include/almost/boost/mpl/aux_/preprocessed/no_ctps/Makefile -- include/almost/boost/mpl/aux_/preprocessed/no_ttp/Makefile -- include/almost/boost/mpl/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/aux_/preprocessor/Makefile -- include/almost/boost/mpl/aux_/range_c/Makefile -- include/almost/boost/mpl/aux_/test/Makefile -- include/almost/boost/mpl/limits/Makefile -- include/almost/boost/mpl/list/aux_/Makefile -- include/almost/boost/mpl/list/aux_/preprocessed/Makefile -- include/almost/boost/mpl/list/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/list/Makefile -- include/almost/boost/mpl/Makefile -- include/almost/boost/mpl/map/aux_/Makefile -- include/almost/boost/mpl/map/aux_/preprocessed/Makefile -- include/almost/boost/mpl/map/aux_/preprocessed/no_ctps/Makefile -- include/almost/boost/mpl/map/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/map/aux_/preprocessed/typeof_based/Makefile -- include/almost/boost/mpl/map/Makefile -- include/almost/boost/mpl/math/Makefile -- include/almost/boost/mpl/multiset/aux_/Makefile -- include/almost/boost/mpl/multiset/Makefile -- include/almost/boost/mpl/set/aux_/Makefile -- include/almost/boost/mpl/set/aux_/preprocessed/Makefile -- include/almost/boost/mpl/set/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/set/Makefile -- include/almost/boost/mpl/vector/aux_/Makefile -- include/almost/boost/mpl/vector/aux_/preprocessed/Makefile -- include/almost/boost/mpl/vector/aux_/preprocessed/no_ctps/Makefile -- include/almost/boost/mpl/vector/aux_/preprocessed/plain/Makefile -- include/almost/boost/mpl/vector/aux_/preprocessed/typeof_based/Makefile -- include/almost/boost/mpl/vector/Makefile -- include/almost/boost/multi_array/Makefile -- include/almost/boost/multi_index/detail/Makefile -- include/almost/boost/multi_index/Makefile -- include/almost/boost/numeric/conversion/detail/Makefile -- include/almost/boost/numeric/conversion/Makefile -- include/almost/boost/numeric/interval/compare/Makefile -- include/almost/boost/numeric/interval/detail/Makefile -- include/almost/boost/numeric/interval/ext/Makefile -- include/almost/boost/numeric/interval/Makefile -- include/almost/boost/numeric/Makefile -- include/almost/boost/numeric/ublas/detail/Makefile -- include/almost/boost/numeric/ublas/Makefile -- include/almost/boost/optional/Makefile -- include/almost/boost/parameter/aux_/Makefile -- include/almost/boost/parameter/Makefile -- include/almost/boost/pending/detail/Makefile -- include/almost/boost/pending/Makefile -- include/almost/boost/pool/detail/Makefile -- include/almost/boost/pool/Makefile -- include/almost/boost/preprocessor/arithmetic/detail/Makefile -- include/almost/boost/preprocessor/arithmetic/Makefile -- include/almost/boost/preprocessor/array/Makefile -- include/almost/boost/preprocessor/comparison/Makefile -- include/almost/boost/preprocessor/config/Makefile -- include/almost/boost/preprocessor/control/detail/dmc/Makefile -- include/almost/boost/preprocessor/control/detail/edg/Makefile -- include/almost/boost/preprocessor/control/detail/Makefile -- include/almost/boost/preprocessor/control/detail/msvc/Makefile -- include/almost/boost/preprocessor/control/Makefile -- include/almost/boost/preprocessor/debug/Makefile -- include/almost/boost/preprocessor/detail/dmc/Makefile -- include/almost/boost/preprocessor/detail/Makefile -- include/almost/boost/preprocessor/facilities/Makefile -- include/almost/boost/preprocessor/iteration/detail/bounds/Makefile -- include/almost/boost/preprocessor/iteration/detail/iter/Makefile -- include/almost/boost/preprocessor/iteration/detail/Makefile -- include/almost/boost/preprocessor/iteration/Makefile -- include/almost/boost/preprocessor/list/detail/dmc/Makefile -- include/almost/boost/preprocessor/list/detail/edg/Makefile -- include/almost/boost/preprocessor/list/detail/Makefile -- include/almost/boost/preprocessor/list/Makefile -- include/almost/boost/preprocessor/logical/Makefile -- include/almost/boost/preprocessor/Makefile -- include/almost/boost/preprocessor/punctuation/Makefile -- include/almost/boost/preprocessor/repetition/detail/dmc/Makefile -- include/almost/boost/preprocessor/repetition/detail/edg/Makefile -- include/almost/boost/preprocessor/repetition/detail/Makefile -- include/almost/boost/preprocessor/repetition/detail/msvc/Makefile -- include/almost/boost/preprocessor/repetition/Makefile -- include/almost/boost/preprocessor/selection/Makefile -- include/almost/boost/preprocessor/seq/detail/Makefile -- include/almost/boost/preprocessor/seq/Makefile -- include/almost/boost/preprocessor/slot/detail/Makefile -- include/almost/boost/preprocessor/slot/Makefile -- include/almost/boost/preprocessor/tuple/Makefile -- include/almost/boost/program_options/detail/Makefile -- include/almost/boost/program_options/Makefile -- include/almost/boost/ptr_container/detail/Makefile -- include/almost/boost/ptr_container/Makefile -- include/almost/boost/python/converter/Makefile -- include/almost/boost/python/detail/Makefile -- include/almost/boost/python/Makefile -- include/almost/boost/python/object/Makefile -- include/almost/boost/python/suite/indexing/detail/Makefile -- include/almost/boost/python/suite/indexing/Makefile -- include/almost/boost/python/suite/Makefile -- include/almost/boost/random/detail/Makefile -- include/almost/boost/random/Makefile -- include/almost/boost/range/detail/Makefile -- include/almost/boost/range/detail/mfc/Makefile -- include/almost/boost/range/detail/vc6/Makefile -- include/almost/boost/range/Makefile -- include/almost/boost/regex/config/Makefile -- include/almost/boost/regex/Makefile -- include/almost/boost/regex/pending/Makefile -- include/almost/boost/regex/v4/Makefile -- include/almost/boost/serialization/detail/Makefile -- include/almost/boost/serialization/Makefile -- include/almost/boost/signals/detail/Makefile -- include/almost/boost/signals/Makefile -- include/almost/boost/thread/detail/Makefile -- include/almost/boost/thread/Makefile -- include/almost/boost/tuple/detail/Makefile -- include/almost/boost/tuple/Makefile -- include/almost/boost/type_traits/detail/Makefile -- include/almost/boost/type_traits/Makefile -- include/almost/boost/utility/detail/Makefile -- include/almost/boost/utility/Makefile -- include/almost/boost/variant/detail/Makefile -- include/almost/boost/variant/Makefile -- include/almost/boost/wave/cpplexer/Makefile -- include/almost/boost/wave/cpplexer/re2clex/Makefile -- include/almost/boost/wave/grammars/Makefile -- include/almost/boost/wave/Makefile -- include/almost/boost/wave/util/Makefile - include/almost/boost_1_30/config/compiler/Makefile - include/almost/boost_1_30/config/Makefile - include/almost/boost_1_30/config/platform/Makefile -@@ -441,7 +247,6 @@ - include/almost/io/Makefile - include/almost/kernel/Makefile - include/almost/kernel/scratch/Makefile -- include/almost/libxml/Makefile - include/almost/Makefile - include/almost/mbmd/Makefile - include/almost/misc/Makefile -@@ -460,7 +265,6 @@ - include/almost/nmr/Makefile - include/almost/tmd/Makefile - include/almost/template/Makefile -- include/almost/tinyxml/Makefile - include/almost/types/Makefile - include/almost/zeta/Makefile - include/Makefile -@@ -470,8 +274,6 @@ - src/lib/Makefile - src/lib/modules/Makefile - src/Makefile -- src/tinyxml/Makefile -- src/libxml/Makefile - src/forcefield/Makefile - src/examples/Makefile - src/tests/Makefile diff --git a/sci-chemistry/almost/files/gcc-4.3.patch b/sci-chemistry/almost/files/gcc-4.3.patch deleted file mode 100644 index 4b27ee1..0000000 --- a/sci-chemistry/almost/files/gcc-4.3.patch +++ /dev/null @@ -1,70 +0,0 @@ -#--- src/lib/modules/shx/shxmalloc.cpp.orig 2008-11-07 11:41:35.000000000 +0100 -#+++ src/lib/modules/shx/shxmalloc.cpp 2008-11-07 11:41:43.000000000 +0100 -#@@ -15,6 +15,7 @@ -# ***************************************************************************/ - -# #include <vector> -#+#include <cstdlib> -# -# using namespace std; -# -#--- ./include/almost/forcefield/spec.h.orig 2008-11-07 11:57:47.000000000 +0100 -#+++ ./include/almost/forcefield/spec.h 2008-11-07 11:58:35.000000000 +0100 -#@@ -20,6 +20,7 @@ -# #define __SPEC__ -# -# #include <almost.h> -#+#include <typeinfo> -# namespace Almost { -# -# struct None{}; ---- include/almost/cheshire/pssi.h.orig 2008-11-07 12:47:11.000000000 +0100 -+++ include/almost/cheshire/pssi.h 2008-11-07 12:47:24.000000000 +0100 -@@ -22,6 +22,7 @@ - #include <almost.h> - #include <sstream> - #include <iterator> -+#include <cstring> - namespace Almost { - - class PSSI { ---- src/lib/algorithm/topos.cpp.orig 2008-11-07 13:18:10.000000000 +0100 -+++ src/lib/algorithm/topos.cpp 2008-11-07 13:18:27.000000000 +0100 -@@ -27,6 +27,7 @@ - #include <cmath> - #include <cheshire/topos.h> - #include <cheshire/topos_rc.h> -+#include <cstring> - namespace Almost { - - namespace Topos { ---- include/almost/rose/rosedb.h.orig 2008-11-07 12:26:56.000000000 +0100 -+++ include/almost/rose/rosedb.h 2008-11-07 12:27:04.000000000 +0100 -@@ -21,6 +21,7 @@ - - #include <almost.h> - #include <iterator> -+#include <cstring> - - namespace Utils { - inline int toinda(char c){ ---- src/lib/zeta/zobj.cpp 2008-07-22 01:31:34.000000000 +0200 -+++ src/lib/zeta/zobj.cpp.new 2008-11-23 19:19:26.000000000 +0100 -@@ -2,6 +2,7 @@ - #include <zeta/zobj.h> - #include <zeta/zobj.hpp> - #include <zeta/zextinstance.h> -+#include <cstring> - - - ZObj * FactoryTrampolin::bind(ZObj * o){ ---- ./src/lib/modules/shx/shxmalloc.cpp 2008-05-07 17:06:49.000000000 +0200 -+++ ./src/lib/modules/shx/shxmalloc.cpp.new 2009-08-22 21:31:55.000000000 +0200 -@@ -15,6 +15,7 @@ - ***************************************************************************/ - - #include <vector> -+#include <cstdlib> - - using namespace std; - diff --git a/sci-chemistry/almost/metadata.xml b/sci-chemistry/almost/metadata.xml deleted file mode 100644 index b3618ba..0000000 --- a/sci-chemistry/almost/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <herd>sci-chemistry</herd> - <maintainer> - <email>j...@gentoo.org</email> - <name>Justin Lecher</name> - </maintainer> -</pkgmetadata>
