commit: cb5cc14f669bad5286c22ff35ce42e3c3ce05ddc Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Mon Nov 16 06:44:59 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Mon Nov 16 06:44:59 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cb5cc14f
Merge branch 'master' of git+ssh://git.gentoo.org/proj/sci * 'master' of git+ssh://git.gentoo.org/proj/sci: sci-chemistry/votca-csg: update live ebuild sci-biology/codonw: add original Thesis of John Peden describing codonw package in more detail sci-biology/BBmap: version bump; apply also the UnicodeToAscii.patch sci-biology/Rcorrector: add einfo() message that default kmer size 23 is suboptimal sci-biology/SEECER: add einfo() message that default kmer size 17 is suboptimal sci-biology/Rcorrector: respect CXXFLAGS sci-biology/Rcorrector: new package sci-biology/jellyfish: fix filename generated by pkgconfig sci-biology/SEECER: patch crappy shellscripts to at leats die on error; require jellyfish-1.1.11 sci-biology/SEECER: remove hardcoded paths sci-biology/BBmap-34.56: restoring previous working version sci-biology/BBmap-35.66: this version needs more cleanup, upstream will make a new release, dropping KEYWORD Update local USE description sci-libs/armadillo: Version bump; remove old .../{BBmap-34.56.ebuild => BBmap-34.97.ebuild} | 1 + .../{BBmap-34.56.ebuild => BBmap-35.66.ebuild} | 3 +- sci-biology/BBmap/ChangeLog | 6 + sci-biology/BBmap/Manifest | 3 +- sci-biology/BBmap/files/UnicodeToAscii.patch | 17 +++ sci-biology/Rcorrector/ChangeLog | 18 +++ sci-biology/Rcorrector/Rcorrector-9999.ebuild | 36 ++++++ .../jhdf5 => sci-biology/Rcorrector}/metadata.xml | 0 sci-biology/SEECER/ChangeLog | 17 +++ ...ECER-0.1.3-r1.ebuild => SEECER-0.1.3-r2.ebuild} | 19 +++- .../SEECER/files/remove-hardcoded-paths.patch | 84 ++++++++++++++ sci-biology/codonw/ChangeLog | 5 + sci-biology/codonw/Manifest | 1 + sci-biology/codonw/codonw-1.4.4-r2.ebuild | 5 +- sci-biology/jellyfish/ChangeLog | 4 + sci-biology/jellyfish/jellyfish-1.1.11.ebuild | 3 +- sci-chemistry/votca-csg/ChangeLog | 3 + sci-chemistry/votca-csg/votca-csg-9999.ebuild | 2 +- sci-libs/armadillo/ChangeLog | 7 ++ sci-libs/armadillo/Manifest | 3 +- sci-libs/armadillo/armadillo-5.500.2.ebuild | 121 --------------------- ...llo-5.400.2.ebuild => armadillo-6.200.3.ebuild} | 2 +- 22 files changed, 226 insertions(+), 134 deletions(-)