commit: aeb330b5d14397ab0a558befd4ff1434a6835e91 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Mar 30 14:18:44 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Mar 30 14:18:44 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=aeb330b5
sci-biology/act-bin: new java package with upstream binaries Package-Manager: portage-2.2.28 sci-biology/act-bin/act-bin-13.0.0.ebuild | 50 +++++++++++++++++++++++++++++++ sci-biology/act-bin/metadata.xml | 12 ++++++++ 2 files changed, 62 insertions(+) diff --git a/sci-biology/act-bin/act-bin-13.0.0.ebuild b/sci-biology/act-bin/act-bin-13.0.0.ebuild new file mode 100644 index 0000000..debf770 --- /dev/null +++ b/sci-biology/act-bin/act-bin-13.0.0.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit java-pkg-2 + +DESCRIPTION="DNA contig sequence comparison tool supplementing Artemis" +HOMEPAGE="http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act"; +SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/sact_v13.jar + ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_v13.jar + ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_manual_complete.pdf -> ${P}.manual.pdf + ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_html_build.zip -> ${P}.html_build.zip" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + !sci-biology/artemis" +RDEPEND="${DEPEND} + >=virtual/jre-1.6:*" + +S="${WORKDIR}" + +src_unpack(){ + unzip "${DISTDIR}"/${P}.html_build.zip || die +} + +src_prepare(){ + default + cd act_html_build || die + rm -f .DS_Store HTML.index HTML.manifest || die +} + +src_install(){ + java-pkg_dojar "${DISTDIR}"/*.jar + dodoc "${DISTDIR}"/${P}.manual.pdf + insinto /usr/share/doc/"${PN}"/html + doins act_html_build/* +} + +pkg_postinst(){ + einfo "For BAM file support please install sci-biology/BamView" + einfo "You may find interesting the additional web resources:" + einfo "http://www.webact.org/WebACT"; + einfo "http://www.hpa-bioinfotools.org.uk/pise/double_act.html"; +} diff --git a/sci-biology/act-bin/metadata.xml b/sci-biology/act-bin/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/act-bin/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
