commit: 3a228937d5822bfdefd17539f8089eac13f427ef Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Jul 12 16:16:10 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Jul 12 16:16:10 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3a228937
sci-biology/conrad: document more issues with the ebuild Package-Manager: portage-2.2.28 sci-biology/conrad/conrad-1.ebuild | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/sci-biology/conrad/conrad-1.ebuild b/sci-biology/conrad/conrad-1.ebuild index f9e19a1..983be76 100644 --- a/sci-biology/conrad/conrad-1.ebuild +++ b/sci-biology/conrad/conrad-1.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit java-pkg-2 java-ant-2 -DESCRIPTION="Gene predictor using ab initio and ad hoc evidence (RNA-Seq, BLAST) on gDNA" +DESCRIPTION="Ab initio- and ad hoc evidence-based (RNA-Seq, BLAST) gene/ORF predictor" HOMEPAGE="http://www.broadinstitute.org/annotation/conrad http://sourceforge.net/projects/conradcrf"; SRC_URI="http://www.broadinstitute.org/annotation/conrad/conradSrcV1.zip"; @@ -16,17 +16,20 @@ SLOT="0" KEYWORDS="" IUSE="" +# upstream binaries do not work with oracle-java-8 RDEPEND=" >=virtual/jre-1.5:* + <=virtual/jre-1.7:* dev-java/commons-logging >=dev-java/commons-lang-2.1:* dev-java/colt dev-java/dom4j " # spring # see bug #97004 - # LBFGS + # dev-java/LBFGS # LBFGS is a numericla library we use internally for the solver DEPEND="${RDEPEND} >=virtual/jdk-1.5:* + <=virtual/jdk-1.7:* dev-java/ant-core >=dev-java/jfreechart-1.0.3 >=dev-java/jcommon-1.0.6
