commit: 34e693f2fc0529853c8af20bc738dcda6a4f68c8 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Jul 12 17:02:43 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Jul 12 17:02:43 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=34e693f2
sci-biology/ampliconnoise: more ebuild tweaks Package-Manager: portage-2.2.28 sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild | 20 +++++++++++++++++--- 1 file changed, 17 insertions(+), 3 deletions(-) diff --git a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild index 40909fd..16af117 100644 --- a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild +++ b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -14,11 +14,22 @@ SRC_URI=" LICENSE="LGPL-3" SLOT="0" KEYWORDS="" -IUSE="" +IUSE="mpi" +RDEPEND=" + mpi? ( virtual/mpi ) + sci-libs/gsl + sci-biology/mafft + sci-biology/usearch-bin + dev-haskell/biosff || ( sci-biology/flower )" + # sci-biology/flower::haskell installs renamed binaries to avoid file collision + # unfortunately flower executable from the two packages + # dev-haskell/biosff::science vs. sci-biology/flower::haskell + # do not offer same cmdline options (upstream did not sync the two packages) S="${WORKDIR}/AmpliconNoiseV1.27" src_compile(){ + # FIXME: the Makefile forcibly calls 'mpicc' emake cd ../DiversityEstimates || die emake @@ -26,5 +37,8 @@ src_compile(){ src_install(){ default - dodoc "${WORKDIR}"/TutorialV1.22/Tutorial.ppt "${WORKDIR}"/TutorialV1.22/SmallTwins.* + dodoc "${WORKDIR}"/TutorialV1.22/Tutorial.ppt "${WORKDIR}"/TutorialV1.22/SmallTwins.* Doc.pdf + mv bin "${DESTDIR}/${EPREFIX}"/usr/ || die + insinto /usr/share/"${PN}"/scripts + doins Scripts/*.pl Scripts/*.sh }