commit: c8acacd097c01e3fcdf254a41d17a6a25e1d648b Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Aug 2 15:21:43 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Aug 2 15:21:43 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c8acacd0
sci-biology/maker: roughly install correctly the main part Package-Manager: portage-2.3.0 sci-biology/maker/maker-2.31.8.ebuild | 16 +++++++++++++--- 1 file changed, 13 insertions(+), 3 deletions(-) diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild index 21734c2..17661aa 100644 --- a/sci-biology/maker/maker-2.31.8.ebuild +++ b/sci-biology/maker/maker-2.31.8.ebuild @@ -4,6 +4,7 @@ EAPI=5 +PERL_EXPORT_PHASE_FUNCTIONS=no inherit eutils perl-module DESCRIPTION="A genome annotation viewer and pipeline for small eukaryota and prokaryota" @@ -36,7 +37,6 @@ DEPEND=" dev-perl/IO-Prompt dev-perl/Perl-Unsafe-Signals dev-perl/forks - dev-perl/forks-shared >=sci-biology/GAL-0.2.1 >=sci-biology/bioperl-1.6 sci-biology/ncbi-tools || ( sci-biology/ncbi-tools++ ) @@ -45,6 +45,7 @@ DEPEND=" sci-biology/augustus sci-biology/repeatmasker" RDEPEND="${DEPEND}" +# dev-perl/forks-shared ? # ============================================================================== # STATUS MAKER v2.31.8 @@ -114,9 +115,18 @@ src_install(){ find . -name mpi_evaluator | xargs rm || die mv bin/compare bin/compare_gff3_to_chado # rename as agreed by upstream, will be in maker-3 as well dobin bin/* + perl_set_version + insinto "${VENDOR_LIB}"/MAKER # uppercase, not "${PN}" + doins perl/lib/MAKER/*.pm + doman perl/man/*.3pm + insinto "${VENDOR_LIB}"/Parallel/Application + doins perl/lib/Parallel/Application/*.pm + insinto /usr/share/"${PN}"/data + doins data/* + # FIXME: find equivalent perl packages for lib/* contents, for example lib/GI.pm dodoc README INSTALL - insinto /usr/share/"{PN}"/GMOD/Apollo + insinto /usr/share/"${PN}"/GMOD/Apollo doins GMOD/Apollo/gff3.tiers - insinto /usr/share/"{PN}"/GMOD/JBrowse + insinto /usr/share/"${PN}"/GMOD/JBrowse doins GMOD/JBrowse/maker.css }