commit: cc5f20a95234b3565df52116900041d251625751 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Aug 19 18:07:39 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Aug 19 18:07:39 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cc5f20a9
sci-biology/igv-2.3.80: version bump, not working yet (upstream github issue #293) Package-Manager: portage-2.3.0 sci-biology/igv/{igv-2.3.52.ebuild => igv-2.3.80.ebuild} | 14 ++++++++------ 1 file changed, 8 insertions(+), 6 deletions(-) diff --git a/sci-biology/igv/igv-2.3.52.ebuild b/sci-biology/igv/igv-2.3.80.ebuild similarity index 80% rename from sci-biology/igv/igv-2.3.52.ebuild rename to sci-biology/igv/igv-2.3.80.ebuild index 9318aa4..55697a9 100644 --- a/sci-biology/igv/igv-2.3.52.ebuild +++ b/sci-biology/igv/igv-2.3.80.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -27,7 +27,7 @@ HOMEPAGE="http://www.broadinstitute.org/igv/" LICENSE="LGPL-2.1" SLOT="0" IUSE="" -KEYWORDS="~amd64" +KEYWORDS="" COMMON_DEPS=" dev-java/absolutelayout @@ -52,7 +52,7 @@ DEPEND=">=virtual/jdk-1.7 RDEPEND=">=virtual/jre-1.7 ${COMMON_DEPS}" -S="${WORKDIR}/igv-${PV}" +S="${WORKDIR}/igv-${PV}" # if the file unpacks into IGV_"${PV}" then you fetched wrong file with the precompiled jar EANT_BUILD_TARGET="all" JAVA_ANT_REWRITE_CLASSPATH="true" @@ -66,12 +66,10 @@ java_prepare() { mv lib oldlib || die mkdir lib || die - mv -v oldlib/{htsjdk-1.124.jar,bcprov-debug-jdk15on-147.jar,jide-oss-3.5.5.jar,goby-io-igv__V1.0.jar,jargs.jar,mongo-java-driver-2.11.3.jar,na12878kb-utils.jar,picard-lib.jar} lib || die + mv -v oldlib/{htsjdk-1.139-patched.jar,jide-oss-3.5.5.jar,goby-io-igv__V1.0.jar,jargs.jar,mongo-java-driver-2.11.3.jar,na12878kb-utils.jar,picard-lib.jar} lib || die mv -v oldlib/batik* lib || die rm -rvf oldlib/* || die - - epatch "${FILESDIR}"/"${PV}"-remove-oracle.jdbc.patch } src_install() { @@ -81,3 +79,7 @@ src_install() { java-pkg_dolauncher igv --jar igv.jar --main org.broad.igv.ui.Main } + +pkg_postinst(){ + einfo "You may want to install sci-biology/blat for easy sequence searches inside igv" +}