commit: 3403656699bb4587f0dd0399078ab36c30535975
Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Wed Aug 31 21:50:28 2016 +0000
Commit: Sebastien Fabbro <bicatali <AT> gentoo <DOT> org>
CommitDate: Wed Aug 31 23:07:25 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=34036566
dev-python/astropy: version bump. fix also xdg sandboxing issue
Gentoo-Bug: 587700
Package-Manager: portage-2.3.0
dev-python/astropy/Manifest | 1 +
dev-python/astropy/astropy-1.2.1.ebuild | 98 ++++++++++++++++++++++
.../astropy/files/astropy-1.2.1-cfitsio-338.patch | 16 ++++
3 files changed, 115 insertions(+)
diff --git a/dev-python/astropy/Manifest b/dev-python/astropy/Manifest
index 2f4f81f..6cf0a59 100644
--- a/dev-python/astropy/Manifest
+++ b/dev-python/astropy/Manifest
@@ -1 +1,2 @@
DIST astropy-1.1.2.tar.gz 8059713 SHA256
6f0d84cd7dfb304bb437dda666406a1d42208c16204043bc920308ff8ffdfad1 SHA512
b83c4a1415a3eb8c016507705d0d2f22971e4da937bb97953eec08f8f856933d8fa76ce8c536122235b19e7879b16add2e20fd2fee3e488f9b2b4bf1b9f4dbdb
WHIRLPOOL
01cdfd33c29f7128e88be3f53b7ecdec37d95ba06acae6ceeba83746e0454aa220396fb00519b30639ac01b5b297fad004488d34856295735e04924d154c4eb9
+DIST astropy-1.2.1.tar.gz 8179665 SHA256
0d7ef702166f26fed239b59fc12edcd5243ca5bf562a36202fd8c6b0270d6e48 SHA512
2ef37537a4c6b2ec50a1d898f600978475c9c5d2cb66ba19d06782656e9ddcb4aa6a8e53217e318448cedac45dac0dce0d8cc2fe94cddc15ebb306b3b0794595
WHIRLPOOL
d37374f23a0121fdc92fa572facc248f0a571dacb8edcf1a9d0987d6a40287de199262ec01f654bd6ea5aece826e5588d2869558152adffe9ab490fa46f2e36d
diff --git a/dev-python/astropy/astropy-1.2.1.ebuild
b/dev-python/astropy/astropy-1.2.1.ebuild
new file mode 100644
index 00000000..20994e5
--- /dev/null
+++ b/dev-python/astropy/astropy-1.2.1.ebuild
@@ -0,0 +1,98 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5} )
+
+inherit distutils-r1 xdg-utils
+
+DESCRIPTION="Core functionality for performing astrophysics with Python"
+HOMEPAGE="http://astropy.org/";
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc test"
+
+RDEPEND="
+ dev-libs/expat:0=
+ dev-python/configobj[${PYTHON_USEDEP}]
+ >=dev-python/numpy-1.10[${PYTHON_USEDEP}]
+ dev-python/ply[${PYTHON_USEDEP}]
+ dev-python/six[${PYTHON_USEDEP}]
+ >=sci-astronomy/erfa-1.2:0=
+ >=sci-astronomy/wcslib-5:0=
+ sci-libs/cfitsio:0=
+ sys-libs/zlib:0="
+DEPEND="${RDEPEND}
+ >=dev-python/astropy-helpers-1.1[${PYTHON_USEDEP}]
+ dev-python/cython[${PYTHON_USEDEP}]
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ virtual/pkgconfig
+ doc? (
+ media-gfx/graphviz
+ $(python_gen_cond_dep 'dev-libs/libxml2[${PYTHON_USEDEP}]'
python2_7)
+ $(python_gen_cond_dep 'dev-python/h5py[${PYTHON_USEDEP}]'
python2_7)
+ $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]'
python2_7)
+ $(python_gen_cond_dep 'dev-python/pytest[${PYTHON_USEDEP}]'
python2_7)
+ $(python_gen_cond_dep 'dev-python/sphinx[${PYTHON_USEDEP}]'
python2_7)
+ $(python_gen_cond_dep 'dev-python/wcsaxes[${PYTHON_USEDEP}]'
python2_7)
+ $(python_gen_cond_dep
'sci-libs/scipy[${PYTHON_USEDEP}]'python2_7)
+ )
+ test? (
+ dev-libs/libxml2[${PYTHON_USEDEP}]
+ dev-python/pytest[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ )"
+
+REQUIRED_USE="doc? ( || ( $(python_gen_useflags 'python2*') ) )"
+
+PATCHES=(
+ "${FILESDIR}/${PN}-1.0.4-system-six.patch"
+ "${FILESDIR}/${PN}-1.0.4-system-configobj.patch"
+ "${FILESDIR}/${PN}-1.1.1-mark-kown-failures.patch"
+ "${FILESDIR}/${PN}-1.2.1-cfitsio-338.patch"
+)
+
+pkg_setup() {
+ use doc && DISTUTILS_ALL_SUBPHASE_IMPLS=( 'python2*' )
+}
+
+python_prepare_all() {
+ export mydistutilsargs="--offline"
+ export ASTROPY_USE_SYSTEM_PYTEST=True
+ rm -r ${PN}_helpers || die
+ cp "${FILESDIR}"/astropy-ply.py astropy/extern/ply.py || die
+ rm -r cextern/{expat,erfa,cfitsio,wcslib} || die
+ sed -i -e '/auto_use/s/True/False/' setup.cfg || die
+ cat >> setup.cfg <<-EOF
+ [build]
+ use_system_libraries=1
+ EOF
+ xdg_environment_reset
+ distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+ if use doc; then
+ python_setup "python2*"
+ VARTEXFONTS="${T}"/fonts \
+ MPLCONFIGDIR="${BUILD_DIR}" \
+ PYTHONPATH="${BUILD_DIR}"/lib \
+ esetup.py build_sphinx
+ fi
+}
+
+python_test() {
+ esetup.py test
+}
+
+python_install_all() {
+ use doc && local HTML_DOCS=( docs/_build/html/. )
+ distutils-r1_python_install_all
+}
diff --git a/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch
b/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch
new file mode 100644
index 00000000..9a688d9
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch
@@ -0,0 +1,16 @@
+Author: Ole Streicher <oleb...@debian.org>
+Description: Make TFORMx check more flexible
+ The maximal column length in cfitsio changed between version 3370 and 3380.
+ This patch checks their syntax, without a specific length.
+Bug: https://github.com/astropy/astropy/issues/4646
+--- a/astropy/io/fits/tests/test_image.py
++++ b/astropy/io/fits/tests/test_image.py
+@@ -1070,7 +1070,7 @@
+ hdu.writeto(self.temp('test.fits'))
+
+ with fits.open(self.temp('test.fits')) as hdul:
+- assert (hdul['SCI'].data == cube).all()
++ assert np.abs(hdul['SCI'].data - cube).max() < 1./15.
+
+ def test_subtractive_dither_seed(self):
+ """
