commit: 02cb4dded41609783964b8a0f6d01dde60455535 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Oct 17 15:21:39 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Oct 17 15:21:39 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=02cb4dde
sci-biology/kat: new package Boost library is not found during linking step Package needs >=python-3.1 as the default python interpreter (for what?) The bundled jellyfish code seems to result in a renamed library and *.pc file so probably it will not clash with system-wide jellyfish Package-Manager: portage-2.3.0 sci-biology/kat/kat-2.1.1.ebuild | 29 +++++++++++++++++++++++++++++ sci-biology/kat/kat-9999.ebuild | 29 +++++++++++++++++++++++++++++ sci-biology/kat/metadata.xml | 12 ++++++++++++ 3 files changed, 70 insertions(+) diff --git a/sci-biology/kat/kat-2.1.1.ebuild b/sci-biology/kat/kat-2.1.1.ebuild new file mode 100644 index 0000000..3a184c9 --- /dev/null +++ b/sci-biology/kat/kat-2.1.1.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python{3_4,3_5} ) # requires python >= 3.1 + +DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)" +HOMEPAGE="https://github.com/TGAC/KAT" +SRC_URI="https://github.com/TGAC/KAT/archive/Release-${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="dev-libs/boost:0 + dev-python/matplotlib + sci-visualization/gnuplot" +RDEPEND="${DEPEND}" +# contains bundled modified version of jellyfish-2.2. + +S="${WORKDIR}"/KAT-Release-"${PV}" + +src_prepare(){ + sh ./autogen.sh . || die + default +} diff --git a/sci-biology/kat/kat-9999.ebuild b/sci-biology/kat/kat-9999.ebuild new file mode 100644 index 0000000..e8735e4 --- /dev/null +++ b/sci-biology/kat/kat-9999.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python{3_4,3_5} ) # requires python >= 3.1 + +inherit git-r3 + +DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)" +HOMEPAGE="https://github.com/TGAC/KAT" +EGIT_REPO_URI="https://github.com/TGAC/KAT.git" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="dev-libs/boost:0 + dev-python/matplotlib + sci-visualization/gnuplot" +RDEPEND="${DEPEND}" +# contains bundled a modified version of jellyfish-2.2.0 + +src_prepare(){ + sh ./autogen.sh . || die + default +} diff --git a/sci-biology/kat/metadata.xml b/sci-biology/kat/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/kat/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>