commit: 9b4464259353a242d2c68276203bcb955a307fd6
Author: Kacper Kowalik <xarthisius <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 3 22:12:00 2016 +0000
Commit: Kacper Kowalik <xarthisius <AT> gentoo <DOT> org>
CommitDate: Sat Dec 3 22:12:47 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9b446425
sci-libs/hdf5: version bump
Fixes security bugs: #601404, #601408, #601414, #601420
Package-Manager: portage-2.3.2
sci-libs/hdf5/Manifest | 1 +
sci-libs/hdf5/hdf5-1.8.18.ebuild | 112 +++++++++++++++++++++++++++++++++++++++
2 files changed, 113 insertions(+)
diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest
index c2a1a58..72b6e9a 100644
--- a/sci-libs/hdf5/Manifest
+++ b/sci-libs/hdf5/Manifest
@@ -1,3 +1,4 @@
DIST hdf5-1.8.14.tar.bz2 9503743 SHA256
53722cb9f5977af2908f92fc1a3f8c597800a5cb448cfe5c75060d6335bb9bab SHA512
c4f0bb01df7bef9cd29c42ec2e27f4bd27c3e059cf18f1285c583e92b94ef799f8a29ec85c17bab12e47a69626851fbda4b8d74543266b01aa2cffc42cde4fea
WHIRLPOOL
646d44d446e2bd2855567046ca00f302e02d39880a77f2d75fd6231ad74692c07910c8670ffa5e02f2922e4e28c5a4afd06f907ac5950615dd328c3e7346f578
DIST hdf5-1.8.15-patch1.tar.bz2 10006036 SHA256
a5afc630c4443547fff15e9637b5b10404adbed4c00206d89517d32d6668fb32 SHA512
380c06f3cab469351d6ddc940c7cdffd5bd20a74e69cb4d549989bec5f130dadae11c04928ead7eea0200a175fc45a042d068a752d8a9c19a35c3a6912a147bd
WHIRLPOOL
0c4c918eea3b70a2c4dea2098f24ddb612af6bf026749144dae19380f60de9d4123acd3c4bf324a1a313e4fae1d7874de48afd9e6720bbcc3c4f1fb1c1bc0288
DIST hdf5-1.8.17.tar.bz2 10030234 SHA256
fc35dd8fd8d398de6b525b27cc111c21fc79795ad6db1b1f12cb15ed1ee8486a SHA512
b0fe630b98a83470c48443215b7073fd22c4390cc459127a4c9554682ae8aec215017c7f34adb8494da4b31fabe6580e9d1b63eddb949432d595e99705c0bbd1
WHIRLPOOL
64e508df74aca518be918dbac10db653004f254779e413ee501a7d550892e6baaa56a0891af28a88d419fa06aa3b06a3c213f45e99b7e2bafc7a9d98e9fe4337
+DIST hdf5-1.8.18.tar.bz2 10081294 SHA256
01c6deadf4211f86922400da82c7a8b5b50dc8fc1ce0b5912de3066af316a48c SHA512
01f6d14bdd3be2ced9c63cc9e1820cd7ea11db649ff9f3a3055c18c4b0fffe777fd23baad536e3bce31c4d76fe17db64a3972762e1bb4d232927c1ca140e72b2
WHIRLPOOL
c1ea97aa30ded9f3129edf47cfda3b7e371aa21fcb2fc409005818f69ed0f0ac41a19e28ec38a5da2c417ef98033f197292169c88f7db81dd94244b016ab2595
diff --git a/sci-libs/hdf5/hdf5-1.8.18.ebuild b/sci-libs/hdf5/hdf5-1.8.18.ebuild
new file mode 100644
index 00000000..db192e0
--- /dev/null
+++ b/sci-libs/hdf5/hdf5-1.8.18.ebuild
@@ -0,0 +1,112 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+FORTRAN_NEEDED=fortran
+AUTOTOOLS_AUTORECONF=1
+
+inherit autotools-utils eutils fortran-2 flag-o-matic toolchain-funcs multilib
+
+MY_P=${PN}-${PV/_p/-patch}
+
+DESCRIPTION="General purpose library and file format for storing scientific
data"
+HOMEPAGE="http://www.hdfgroup.org/HDF5/";
+#SRC_URI="https://support.hdfgroup.org/ftp/HDF5/releases/${MY_P}/src/${MY_P}.tar.bz2";
+# TODO: return to proper SRC_URI once upstream fixes their release
+SRC_URI="https://support.hdfgroup.org/ftp/HDF5/current18/src/${MY_P}.tar.bz2";
+
+LICENSE="NCSA-HDF"
+SLOT="0/${PV%%_p*}"
+KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd
~amd64-linux ~x86-linux"
+IUSE="cxx debug examples fortran fortran2003 +hl mpi static-libs szip threads
zlib"
+
+REQUIRED_USE="
+ threads? ( !cxx !mpi !fortran !hl )
+ fortran2003? ( fortran )"
+
+RDEPEND="
+ mpi? ( virtual/mpi[romio] )
+ szip? ( virtual/szip )
+ zlib? ( sys-libs/zlib:0= )"
+
+DEPEND="${RDEPEND}
+ sys-devel/libtool:2
+ >=sys-devel/autoconf-2.69"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch
+ "${FILESDIR}"/${PN}-1.8.9-mpicxx.patch
+ "${FILESDIR}"/${PN}-1.8.13-no-messing-ldpath.patch
+ "${FILESDIR}"/${PN}-1.8.15-implicits.patch
+)
+
+pkg_setup() {
+ tc-export CXX CC AR # workaround for bug 285148
+ if use fortran; then
+ use fortran2003 && FORTRAN_STANDARD=2003
+ fortran-2_pkg_setup
+ fi
+ if use mpi; then
+ if has_version 'sci-libs/hdf5[-mpi]'; then
+ ewarn "Installing hdf5 with mpi enabled with a previous
hdf5 with mpi disabled may fail."
+ ewarn "Try to uninstall the current hdf5 prior to
enabling mpi support."
+ fi
+ export CC=mpicc
+ use fortran && export FC=mpif90
+ if use cxx ; then
+ export CXX=mpicxx
+ ewarn "USE='mpi cxx' requires a configuration
unsupported by upstream. Use at your own risk."
+ ewarn "In particular, the C++ API is not parallel safe."
+ fi
+ elif has_version 'sci-libs/hdf5[mpi]'; then
+ ewarn "Installing hdf5 with mpi disabled while having hdf5
installed with mpi enabled may fail."
+ ewarn "Try to uninstall the current hdf5 prior to disabling mpi
support."
+ fi
+}
+
+src_prepare() {
+ # respect gentoo examples directory
+ sed \
+ -e "s:hdf5_examples:doc/${PF}/examples:g" \
+ -i $(find . -name Makefile.am) $(find . -name "run*.sh.in") ||
die
+ sed \
+ -e '/docdir/d' \
+ -i config/commence.am || die
+ if ! use examples; then
+ sed -e '/^install:/ s/install-examples//' \
+ -i Makefile.am || die #409091
+ fi
+ # enable shared libs by default for h5cc config utility
+ sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in || die
+ # bug #419677
+ use prefix && \
+ append-ldflags -Wl,-rpath,"${EPREFIX}"/usr/$(get_libdir) \
+ -Wl,-rpath,"${EPREFIX}"/$(get_libdir)
+ autotools-utils_src_prepare
+}
+
+src_configure() {
+ local myeconfargs=(
+ --enable-production
+ --docdir="${EPREFIX}"/usr/share/doc/${PF}
+ --enable-deprecated-symbols
+ $(use_enable prefix sharedlib-rpath)
+ $(use_enable debug debug all)
+ $(use_enable debug codestack)
+ $(use_enable cxx)
+ $(use_enable fortran)
+ $(use_enable fortran2003)
+ $(use_enable hl)
+ $(use_enable mpi parallel)
+ $(use_enable threads threadsafe)
+ $(use_with szip szlib)
+ $(use_with threads pthread)
+ $(use_with zlib)
+ $(use mpi && use cxx && echo --enable-unsupported)
+ )
+ autotools-utils_src_configure
+}
