commit: 26242100ae861907ae58864ffac9163bf9be51ed Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Feb 26 13:52:38 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Feb 26 13:52:38 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=26242100
sci-biology/flexbar: version bump https://github.com/seqan/flexbar/issues/8 Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-biology/flexbar/flexbar-2.4.ebuild | 23 ---------------------- sci-biology/flexbar/flexbar-2.7.0.ebuild | 33 ++++++++++++++++++++++++++++++++ 2 files changed, 33 insertions(+), 23 deletions(-) diff --git a/sci-biology/flexbar/flexbar-2.4.ebuild b/sci-biology/flexbar/flexbar-2.4.ebuild deleted file mode 100644 index 515dabcfc..000000000 --- a/sci-biology/flexbar/flexbar-2.4.ebuild +++ /dev/null @@ -1,23 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils - -DESCRIPTION="Barcode, MID tag and adapter sequence removal" -HOMEPAGE="https://sourceforge.net/p/flexbar/wiki/Manual"; -SRC_URI="http://sourceforge.net/projects/flexbar/files/2.4/flexbar_v2.4_src.tgz"; - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -CDEPEND=" - dev-cpp/tbb - >=sci-biology/seqan-1.4.1:0" -DEPEND="${CDEPEND}" -RDEPEND="${CDEPEND}" - -S="${WORKDIR}"/"${PN}"_v"${PV}"_src diff --git a/sci-biology/flexbar/flexbar-2.7.0.ebuild b/sci-biology/flexbar/flexbar-2.7.0.ebuild new file mode 100644 index 000000000..5fbee3998 --- /dev/null +++ b/sci-biology/flexbar/flexbar-2.7.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils + +DESCRIPTION="Barcode, MID tag and adapter sequence removal" +HOMEPAGE="https://github.com/seqan/flexbar"; +SRC_URI="https://github.com/seqan/flexbar/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +CDEPEND=" + dev-cpp/tbb + >=sci-biology/seqan-2.1.1:0" +DEPEND="${CDEPEND}" +RDEPEND="${CDEPEND}" + +# TODO: need to call 'pkg-config --cflags seqan-2.2' and pass it down +src_configure() { + local CPPFLAGS=${CPPFLAGS} + append-cppflags `pkg-config --cflags seqan-2.2` + local CXXFLAGS="${CXXFLAGS}" + append-cxxflags "-std=c++14" + cmake-utils_src_configure +} + +# SeqAn requires C++14! You must compile your application with -std=c++14, -std=gnu++14 or -std=c++1y +# https://github.com/seqan/flexbar/issues/8
