commit: 9aa9128dbcee64dbd1a31cbb9f2c378c822a7ae3 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sun Mar 26 08:35:16 2017 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sun Mar 26 08:35:16 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9aa9128d
Drop masked package - sci-biology/inGAP-bin Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> profiles/package.mask | 1 - sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild | 40 ---------------------------- sci-biology/inGAP-bin/metadata.xml | 15 ----------- 3 files changed, 56 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 29b07cf02..b3f8b7f46 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -39,7 +39,6 @@ sci-mathematics/scilab # Justin Lecher <j...@gentoo.org> (9 Feb 2016) # rev dep masked -sci-biology/inGAP-bin # Andreas K. Huettel <dilfri...@gentoo.org> (1 Nov 2014) # Lab::Instrument and Lab::Tools provided as separate packages diff --git a/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild b/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild deleted file mode 100644 index c6f691422..000000000 --- a/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -MY_PV="3_0_1" -S="${WORKDIR}"/inGAP_"${MY_PV}" - -inherit java-utils-2 - -DESCRIPTION="Detect SNPs and indels from Next-gen sequences using a Bayesian algorithm" -HOMEPAGE=" - http://sites.google.com/site/nextgengenomics/ingap - http://sourceforge.net/projects/ingap/" -SRC_URI="http://sourceforge.net/projects/ingap/files/ingap/v"${PV}"/inGAP_"${MY_PV}".tgz" - -LICENSE="LGPL-3" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=">=virtual/jre-1.7:*" -RDEPEND="${DEPEND} - dev-java/jfreechart - dev-java/swing-layout - dev-java/jcommon - dev-java/itext - dev-java/bytecode - sci-biology/biojava - dev-java/absolutelayout" # gnujaxp ? - -src_install(){ - java-pkg_dojar inGAP.jar - java-pkg_dolauncher inGAP --jar inGAP.jar - # dobin external/bin/{primer3_core, run_cpp, trf} - newdoc manual.pdf inGAP_Manual.pdf - dodoc doc/manual.htm - insinto /usr/share/inGAP/manual_files - doins doc/manual_files/*.png -} diff --git a/sci-biology/inGAP-bin/metadata.xml b/sci-biology/inGAP-bin/metadata.xml deleted file mode 100644 index 4e706cb4c..000000000 --- a/sci-biology/inGAP-bin/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokr...@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">ingap</remote-id> - </upstream> -</pkgmetadata>