commit: 65d331f931f54d7c099446acf1eb1796e61ce990 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Fri Apr 14 19:34:39 2017 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Fri Apr 14 19:34:39 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=65d331f9
dev-python/numpy: Version Bump Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=607914 Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> dev-python/numpy/Manifest | 1 + .../files/numpy-1.12.1-no-hardcode-blas.patch | 72 +++++++++ dev-python/numpy/numpy-1.12.1.ebuild | 164 +++++++++++++++++++++ 3 files changed, 237 insertions(+) diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest index 7c95901d637..856d490efce 100644 --- a/dev-python/numpy/Manifest +++ b/dev-python/numpy/Manifest @@ -2,6 +2,7 @@ DIST numpy-1.10.1.tar.gz 4048478 SHA256 8b9f453f29ce96a14e625100d3dcf8926301d36c DIST numpy-1.10.2.tar.gz 4055005 SHA256 23a3befdf955db4d616f8bb77b324680a80a323e0c42a7e8d7388ef578d8ffa9 SHA512 040db49593f3c53c9b43301eacffc3b5817310f1dbb91fd650efcf5ba65ce7e217549dc5268bc56846f19f1a03dd19470989005aa176531af44d602b3546b007 WHIRLPOOL 30c4b365aac6623241afd72fc30d3a543183205eb23db1366937e39fc50dee862923dd249775fee67cce0199940a57ec1423f1cb0e65ff7c65764c7969d7a76f DIST numpy-1.10.4.tar.gz 4069996 SHA256 7356e98fbcc529e8d540666f5a919912752e569150e9a4f8d869c686f14c720b SHA512 57ace46e357d49be0efd904e5ceb9862c626c916987c8798a12de7ae1e06816ad8483439ac4619792a04889631b5998f2397dc601c78dea33a784b4831c19c79 WHIRLPOOL 76946c2543b1cade06d71f83fd507bd818c1090baa9c3ddda7d1f48d48ed23672c5d9de76db890df990c6d8b7b26b71d3ce733c448943ad4177374a957360d1c DIST numpy-1.11.2.tar.gz 4178447 SHA256 04db2fbd64e2e7c68e740b14402b25af51418fc43a59d9e54172b38b906b0f69 SHA512 c1818de5c8b92cc2a673149f090cc863b484afd29e8a014ffcf8d0f5e70cf8886c7662dbe45847712dec8ae0412d1cb48b13cceefe3e4ec0e85bb20e4beaa46e WHIRLPOOL 668acc8ada165b57e1b2ab76969affa0098a5746c4ca21ae88cd189c5e6f79bde9d05bf951604d0c0f7400174f1e58f17fa0d662029f0b91cff78118fe3cdb0d +DIST numpy-1.12.1.zip 4824784 SHA256 a65266a4ad6ec8936a1bc85ce51f8600634a31a258b722c9274a80ff189d9542 SHA512 156319821e4f0cf8d820e977da704aab274b7a4a4b792f6e40d7c0f2827700c990f55f1ca9650523c62c9e937f0e75f336d091d46ca47aaa9875c68fe32bac2a WHIRLPOOL 1ecd1df77d2a64bc6db1910446f60b477ebf5a1cf33ec2e1fced56dbbf1a7df5fef004c7f84f0dccb0ca20ea7ab73c384e4d247eb9700159a18c9a4a51e4db6d DIST numpy-1.8.2.tar.gz 3792998 SHA256 6d487fc724780d66746bde264ea71f5cd77d3a39e52ee2b073dcaed63bc669db SHA512 996e6b8e2d42f223e44660f56bf73eb8ab124f400d89218f8f5e4d7c9860ada44a4d7c54526137b0695c7a10f36e8834fbf0d42b7cb20bcdb5d5c245d673385c WHIRLPOOL 0d3a05b1e3c0a1ceb0a7b4818406dbb45506e5f25bc2727d4ff44cc0a0520e6556b3c68ae24dbca37ba9d67ae2defbb3ff9c906d4c2635b29ed44452d70e8311 DIST numpy-1.9.2.tar.gz 3986067 SHA256 325e5f2b0b434ecb6e6882c7e1034cc6cdde3eeeea87dbc482575199a6aeef2a SHA512 70470ebb9afef5dfd0c83ceb7a9d5f1b7a072b1a9b54b04f04f5ed50fbaedd5b4906bd500472268d478f94df9e749a88698b1ff30f2d80258e7f3fec040617d9 WHIRLPOOL 59f5dc52cb95c7ce80fec3a7feac6cfda1d149596bf6d95c18bd8314e31a8df494b2b470c4cc3d8c296c9fc11c718d70d5b9b5344337175ca75496504c0fd201 DIST numpy-1.9.3.tar.gz 3984430 SHA256 c3b74d3b9da4ceb11f66abd21e117da8cf584b63a0efbd01a9b7e91b693fbbd6 SHA512 32531cd8d1480a50812454ef8e3b68c0f84b2a4bc5de0df1457070db7f6fd94cdb50e6479a85fa4d1dc569a10d28f6864d5069fcf2a32fa20fa8803476a3df8c WHIRLPOOL a0235594e793625d5e3cef57956f4710587158885f39d7d1267c9845b12fb1d39fb9987ec095720c2d285c7c726383a15471f3629b739b77186470e2c40ba093 diff --git a/dev-python/numpy/files/numpy-1.12.1-no-hardcode-blas.patch b/dev-python/numpy/files/numpy-1.12.1-no-hardcode-blas.patch new file mode 100644 index 00000000000..81d6084be3d --- /dev/null +++ b/dev-python/numpy/files/numpy-1.12.1-no-hardcode-blas.patch @@ -0,0 +1,72 @@ +--- numpy-1.11.1/numpy/distutils/system_info.py ++++ numpy-1.11.1/numpy/distutils/system_info.py +@@ -312,27 +312,7 @@ + 1 - display warning message + 2 - raise error + """ +- cl = {'atlas': atlas_info, # use lapack_opt or blas_opt instead +- 'atlas_threads': atlas_threads_info, # ditto +- 'atlas_blas': atlas_blas_info, +- 'atlas_blas_threads': atlas_blas_threads_info, +- 'lapack_atlas': lapack_atlas_info, # use lapack_opt instead +- 'lapack_atlas_threads': lapack_atlas_threads_info, # ditto +- 'atlas_3_10': atlas_3_10_info, # use lapack_opt or blas_opt instead +- 'atlas_3_10_threads': atlas_3_10_threads_info, # ditto +- 'atlas_3_10_blas': atlas_3_10_blas_info, +- 'atlas_3_10_blas_threads': atlas_3_10_blas_threads_info, +- 'lapack_atlas_3_10': lapack_atlas_3_10_info, # use lapack_opt instead +- 'lapack_atlas_3_10_threads': lapack_atlas_3_10_threads_info, # ditto +- 'mkl': mkl_info, +- # openblas which may or may not have embedded lapack +- 'openblas': openblas_info, # use blas_opt instead +- # openblas with embedded lapack +- 'openblas_lapack': openblas_lapack_info, # use blas_opt instead +- 'blis': blis_info, # use blas_opt instead +- 'lapack_mkl': lapack_mkl_info, # use lapack_opt instead +- 'blas_mkl': blas_mkl_info, # use blas_opt instead +- 'x11': x11_info, ++ cl = {'x11': x11_info, + 'fft_opt': fft_opt_info, + 'fftw': fftw_info, + 'fftw2': fftw2_info, +@@ -669,10 +650,7 @@ + return [b for b in [a.strip() for a in libs.split(',')] if b] + + def get_libraries(self, key='libraries'): +- if hasattr(self, '_lib_names'): +- return self.get_libs(key, default=self._lib_names) +- else: +- return self.get_libs(key, '') ++ return self.get_libs(key, '') + + def library_extensions(self): + static_exts = ['.a'] +@@ -1685,7 +1663,7 @@ + lib = self.has_cblas(info) + if lib is not None: + info['language'] = 'c' +- info['libraries'] = [lib] ++ info['libraries'] = lib + info['define_macros'] = [('HAVE_CBLAS', None)] + self.set_info(**info) + +@@ -1718,16 +1696,16 @@ + # check for cblas lib, and if not present check for blas lib. + try: + c.link_executable(obj, os.path.join(tmpdir, "a.out"), +- libraries=["cblas"], ++ libraries=info["libraries"], + library_dirs=info['library_dirs'], + extra_postargs=info.get('extra_link_args', [])) +- res = "cblas" ++ res = info["libraries"] + except distutils.ccompiler.LinkError: + c.link_executable(obj, os.path.join(tmpdir, "a.out"), + libraries=["blas"], + library_dirs=info['library_dirs'], + extra_postargs=info.get('extra_link_args', [])) +- res = "blas" ++ res = ["blas"] + except distutils.ccompiler.CompileError: + res = None + finally: diff --git a/dev-python/numpy/numpy-1.12.1.ebuild b/dev-python/numpy/numpy-1.12.1.ebuild new file mode 100644 index 00000000000..923ecd5f7c4 --- /dev/null +++ b/dev-python/numpy/numpy-1.12.1.ebuild @@ -0,0 +1,164 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) +PYTHON_REQ_USE="threads(+)" + +FORTRAN_NEEDED=lapack + +inherit distutils-r1 flag-o-matic fortran-2 multiprocessing toolchain-funcs versionator + +DOC_PV="1.11.0" +DOC_P="${PN}-${DOC_PV}" + +DESCRIPTION="Fast array and numerical python library" +HOMEPAGE="http://www.numpy.org/"; +SRC_URI=" + mirror://pypi/${PN:0:1}/${PN}/${P}.zip + doc? ( + http://docs.scipy.org/doc/${DOC_P}/${PN}-html-${DOC_PV}.zip + http://docs.scipy.org/doc/${DOC_P}/${PN}-ref-${DOC_PV}.pdf + http://docs.scipy.org/doc/${DOC_P}/${PN}-user-${DOC_PV}.pdf + )" +# It appears the docs haven't been upgraded, still @ 1.11.0 +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris" +IUSE="doc lapack test" + +RDEPEND="lapack? ( virtual/cblas virtual/lapack )" +DEPEND="${RDEPEND} + dev-python/setuptools[${PYTHON_USEDEP}] + doc? ( app-arch/unzip ) + lapack? ( virtual/pkgconfig ) + test? ( >=dev-python/nose-1.0[${PYTHON_USEDEP}] )" + +PATCHES=( + "${FILESDIR}"/${P}-no-hardcode-blas.patch + "${FILESDIR}"/${PN}-1.11.2-blas_rec_inc_dir.patch +) + +src_unpack() { + default + if use doc; then + unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die + fi +} + +pc_incdir() { + $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ + sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libdir() { + $(tc-getPKG_CONFIG) --libs-only-L $@ | \ + sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libs() { + $(tc-getPKG_CONFIG) --libs-only-l $@ | \ + sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ + -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ + | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' +} + +python_prepare_all() { + if use lapack; then + append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas lapack)" + local libdir="${EPREFIX}"/usr/$(get_libdir) + cat >> site.cfg <<-EOF || die + [blas] + include_dirs = $(pc_incdir cblas) + library_dirs = $(pc_libdir cblas blas):${libdir} + blas_libs = $(pc_libs cblas blas) + [lapack] + library_dirs = $(pc_libdir lapack):${libdir} + lapack_libs = $(pc_libs lapack) + EOF + else + export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None + fi + + export CC="$(tc-getCC) ${CFLAGS}" + + append-flags -fno-strict-aliasing + + # See progress in http://projects.scipy.org/scipy/numpy/ticket/573 + # with the subtle difference that we don't want to break Darwin where + # -shared is not a valid linker argument + if [[ ${CHOST} != *-darwin* ]]; then + append-ldflags -shared + fi + + # only one fortran to link with: + # linking with cblas and lapack library will force + # autodetecting and linking to all available fortran compilers + append-fflags -fPIC + if use lapack; then + NUMPY_FCONFIG="config_fc --noopt --noarch" + # workaround bug 335908 + [[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95" + fi + + # don't version f2py, we will handle it. + sed -i -e '/f2py_exe/s: + os\.path.*$::' numpy/f2py/setup.py || die + + # we don't have f2py-3.3 + sed \ + -e 's:test_f2py:_&:g' \ + -i numpy/tests/test_scripts.py || die + + # QA bug 590464 + # The .py files from numpy/core/tests are just added, instead + # of being bytecode compiled as a proper subdir package. + # We trick the buildsystem into accepting it as a bytecode + # package by adding a setup.py and an empty __init__.py + #cp numpy/{compat/setup.py,core/tests} || die + #touch numpy/core/tests/__init__.py || die + #sed \ + # -e 's:compat:tests:' \ + # -i numpy/core/tests/setup.py || die + #sed \ + # -e "s:config\.add_data_dir('tests'):config\.add_subpackage('tests'):" \ + # -i numpy/core/setup.py || die + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile \ + $(usex python_targets_python3_5 "" "-j $(makeopts_jobs)") \ + ${NUMPY_FCONFIG} +} + +python_test() { + distutils_install_for_testing --single-version-externally-managed --record "${TMPDIR}/record.txt" ${NUMPY_FCONFIG} + + cd "${TMPDIR}" || die + + ${EPYTHON} -c " +import numpy, sys +r = numpy.test(label='full', verbose=3) +sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}" +} + +python_install() { + distutils-r1_python_install ${NUMPY_FCONFIG} +} + +python_install_all() { + DOCS+=( THANKS.txt ) + + if use doc; then + HTML_DOCS=( "${WORKDIR}"/html/. ) + DOCS+=( "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf ) + fi + + distutils-r1_python_install_all + + docinto f2py + dodoc doc/f2py/*.txt + doman doc/f2py/f2py.1 +}
