commit: d32ee40acbcb944ebc89a37b5935e84bbe2bf36b Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Apr 19 09:16:35 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Apr 19 09:16:35 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d32ee40a
sci-biology/vcftools: add a pre-release version Our build patch for 0.1.14 was accepted by upstream. Package-Manager: Portage-2.3.5, Repoman-2.3.2 sci-biology/vcftools/metadata.xml | 11 ++++++++ sci-biology/vcftools/vcftools-0.1.15_pre.ebuild | 35 +++++++++++++++++++++++++ 2 files changed, 46 insertions(+) diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml new file mode 100644 index 000000000..77f6f92e0 --- /dev/null +++ b/sci-biology/vcftools/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="sourceforge">vcftools</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-biology/vcftools/vcftools-0.1.15_pre.ebuild b/sci-biology/vcftools/vcftools-0.1.15_pre.ebuild new file mode 100644 index 000000000..0610b01a1 --- /dev/null +++ b/sci-biology/vcftools/vcftools-0.1.15_pre.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools flag-o-matic perl-functions toolchain-funcs + +MY_PV=${PV/_pre/} +S="${WORKDIR}/${PN}-${MY_PV}" + +DESCRIPTION="Tools for working with VCF (Variant Call Format) files" +HOMEPAGE="http://vcftools.sourceforge.net/"; +SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${MY_PV}/${PN}-${MY_PV}.tar.gz"; + +LICENSE="LGPL-3" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="lapack" + +RDEPEND="sys-libs/zlib + dev-lang/perl:= + lapack? ( virtual/lapack )" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +src_configure() { + perl_set_version + + append-flags $($(tc-getPKG_CONFIG) --cflags lapack) + append-libs $($(tc-getPKG_CONFIG) --libs lapack) + + econf \ + $(use_enable lapack pca) \ + --with-pmdir="${VENDOR_LIB#${EPREFIX}/usr}" +}
