commit: 4bc9cc3e0c3601751f67183b64405caf98191ec8 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Thu Sep 7 20:39:02 2017 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Thu Sep 7 20:39:02 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4bc9cc3e
sci-biology/pairagon: Fix double-prefix Closes: https://bugs.gentoo.org/show_bug.cgi?id=587702 Package-Manager: Portage-2.3.8, Repoman-2.3.3 sci-biology/pairagon/pairagon-1.1.ebuild | 37 +++++++++++++++++--------------- 1 file changed, 20 insertions(+), 17 deletions(-) diff --git a/sci-biology/pairagon/pairagon-1.1.ebuild b/sci-biology/pairagon/pairagon-1.1.ebuild index c23129f74..843198232 100644 --- a/sci-biology/pairagon/pairagon-1.1.ebuild +++ b/sci-biology/pairagon/pairagon-1.1.ebuild @@ -1,10 +1,9 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=6 -PERL_EXPORT_PHASE_FUNCTIONS=no -inherit perl-module eutils toolchain-funcs +inherit perl-functions toolchain-funcs DESCRIPTION="HMM-based cDNA to genome aligner" HOMEPAGE="http://mblab.wustl.edu/software.html" @@ -15,26 +14,30 @@ SLOT="0" KEYWORDS="~amd64" IUSE="" -DEPEND="dev-lang/perl" +DEPEND="dev-lang/perl:=" RDEPEND="${DEPEND}" -S="${WORKDIR}"/pairagon +S=${WORKDIR}/${PN} -src_prepare(){ - sed -e 's:src/get-glib-flags.sh:#src/get-glib-flags.sh:; s:-Wall -Werror::' -i Makefile - sed -e 's/^use Alignment/use pairagon::Alignment/' -i bin/alignmentConvert.pl || die +src_prepare() { + default + + sed -e 's:src/get-glib-flags.sh:#src/get-glib-flags.sh:; s:-Wall -Werror::' \ + -i Makefile || die + sed -e 's/^use Alignment/use pairagon::Alignment/' \ + -i bin/alignmentConvert.pl || die } -src_compile(){ +src_compile() { emake pairagon-linux } -src_install(){ - dobin bin/pairagon bin/pairameter_estimate bin/Pairagon.pl bin/alignmentConvert.pl - dodoc README - perl_set_version +src_install() { + dobin bin/{pairagon,pairameter_estimate,Pairagon.pl,alignmentConvert.pl} + einstalldocs + insinto /usr/share/pairagon - doins parameters/* - insinto ${VENDOR_LIB}/${PN} - doins lib/perl5/Alignment.pm + doins -r parameters/. + + perl_domodule -C ${PN} lib/perl5/Alignment.pm }