commit: e1f1667c293f69f7ae354b3b96fd62b16bc6f141 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Jun 17 10:06:04 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Jun 17 10:06:04 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e1f1667c
sci-biology/geneid: new package, works Package-Manager: portage-2.2.7 --- sci-biology/geneid/ChangeLog | 9 +++++++++ sci-biology/geneid/files/Makefile.patch | 11 +++++++++++ sci-biology/geneid/geneid-1.4.4.ebuild | 32 ++++++++++++++++++++++++++++++++ sci-biology/geneid/metadata.xml | 9 +++++++++ 4 files changed, 61 insertions(+) diff --git a/sci-biology/geneid/ChangeLog b/sci-biology/geneid/ChangeLog new file mode 100644 index 0000000..d140912 --- /dev/null +++ b/sci-biology/geneid/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/geneid +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*geneid-1.4.4 (17 Jun 2014) + + 17 Jun 2014; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +files/Makefile.patch, +geneid-1.4.4.ebuild, +metadata.xml: + sci-biology/geneid: new package, works diff --git a/sci-biology/geneid/files/Makefile.patch b/sci-biology/geneid/files/Makefile.patch new file mode 100644 index 0000000..bd6a866 --- /dev/null +++ b/sci-biology/geneid/files/Makefile.patch @@ -0,0 +1,11 @@ +--- geneid/Makefile 2014-06-17 11:37:07.000000000 +0200 ++++ geneid/Makefile 2014-06-17 11:37:27.000000000 +0200 +@@ -13,7 +13,7 @@ + PROGRAM= geneid + PRODUCT= $(BIN)/$(PROGRAM) + CC=gcc +-OPTS=-I$(INCLUDE) -Wall -O3 ++OPTS=$(CFLAGS) -I$(INCLUDE) + #OPTS=-I$(INCLUDE) -Wall -g + ####### + diff --git a/sci-biology/geneid/geneid-1.4.4.ebuild b/sci-biology/geneid/geneid-1.4.4.ebuild new file mode 100644 index 0000000..48bda66 --- /dev/null +++ b/sci-biology/geneid/geneid-1.4.4.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit eutils + +DESCRIPTION="An ab initio exon/gene finding program" +HOMEPAGE="http://genome.crg.es/software/geneid"; +SRC_URI="ftp://genome.crg.es/pub/software/geneid/geneid_v1.4.4.Jan_13_2011.tar.gz"; + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/"${PN}" + +src_prepare() { + epatch "${FILESDIR}"/Makefile.patch +} + +src_install() { + dobin bin/geneid + dohtml docs/*.html + dohtml -r docs/chapter* + dohtml -r docs/images +} diff --git a/sci-biology/geneid/metadata.xml b/sci-biology/geneid/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/geneid/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
