commit: 71cdc2ea8a2ce9b5fbf6aaf315c1d7c7016805b9 Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Apr 1 20:46:38 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Apr 1 20:46:38 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=71cdc2ea
sci-biology/diamond: new package Do not know if the SSE instruction calls can be protected with CPU_FLAGS or similar. See page 2 in diamond_manual.pdf . Package-Manager: Portage-2.3.27, Repoman-2.3.9 sci-biology/diamond/diamond-0.9.19.ebuild | 27 +++++++++++++++++++++++++++ sci-biology/diamond/metadata.xml | 12 ++++++++++++ 2 files changed, 39 insertions(+) diff --git a/sci-biology/diamond/diamond-0.9.19.ebuild b/sci-biology/diamond/diamond-0.9.19.ebuild new file mode 100644 index 000000000..fde9b9080 --- /dev/null +++ b/sci-biology/diamond/diamond-0.9.19.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs cmake-utils + +DESCRIPTION="Alternative of blastp/blastx searches using DNA short reads through protein db" +HOMEPAGE="http://ab.inf.uni-tuebingen.de/software/diamond + https://github.com/bbuchfink/diamond"; +SRC_URI="https://github.com/bbuchfink/diamond/archive/v${PV}.tar.gz"; +# EGIT_REPO_URI="https://github.com/bbuchfink/diamond.git"; + +LICENSE="AGPL-3" # diamond_manual.pdf says AGPL but src/COPYING used to say BSD? +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +# uses SSE instructions, SSSE3 and POPCNT + +DEPEND="" +RDEPEND="${DEPEND}" + +# use cmake -DBUILD_STATIC=ON to create a statically linked binary +src_install(){ + cmake-utils_src_install + dodoc README.rst diamond_manual.pdf +} diff --git a/sci-biology/diamond/metadata.xml b/sci-biology/diamond/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/diamond/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
