[gentoo-commits] proj/sci:master commit in: sci-biology/emboss/files/, sci-biology/emboss/

[Martin Mokrejs]

commit:     2ff987f23c228b8e4494df4908bbce11f9c3eec0
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul  4 16:51:12 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul  4 16:51:12 2014 +0000
URL:        
http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2ff987f2

sci-biology/emboss-6.3.1_p4-r2: added a patch for 'undefined reference to 
c_plwid' bug #493724

Package-Manager: portage-2.2.7

---
 sci-biology/emboss/ChangeLog                                |  6 ++++++
 sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild                |  1 +
 .../files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch  | 13 +++++++++++++
 3 files changed, 20 insertions(+)

diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog
index 9dd52d9..b047e8c 100644
--- a/sci-biology/emboss/ChangeLog
+++ b/sci-biology/emboss/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.61 
2011/03/09 16:29:05 jlec Exp $
 
+  04 Jul 2014; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
+  +files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch,
+  emboss-6.3.1_p4-r2.ebuild:
+  sci-biology/emboss-6.3.1_p4-r2: added a patch for 'undefined reference to
+  c_plwid' bug #493724
+
   24 Mar 2014; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
   emboss-6.3.1_p4-r2.ebuild:
   sci-biology/emboss-6.3.1_p4-r2: add plplot dependency, trying to get rid of a

diff --git a/sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild 
b/sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild
index 59a7d49..962d472 100644
--- a/sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild
+++ b/sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild
@@ -42,6 +42,7 @@ src_prepare() {
        epatch "${WORKDIR}"/${PF}.patch
        epatch "${FILESDIR}/${PF}"_plcol.patch
        epatch "${FILESDIR}/${PF}"_compilations-paths.patch
+       epatch "${FILESDIR}/${PF}"_rename_plwid_to_plwidth.patch
        # cp "${FILESDIR}"/ax_lib_mysql.m4 "${S}"/m4/mysql.m4
        emboss_src_prepare
        autoreconf -vfi

diff --git 
a/sci-biology/emboss/files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch 
b/sci-biology/emboss/files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch
new file mode 100644
index 0000000..e66a696
--- /dev/null
+++ b/sci-biology/emboss/files/emboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch
@@ -0,0 +1,13 @@
+--- EMBOSS-6.3.1/ajax/graphics/ajgraph.c.ori   2014-07-04 18:25:18.000000000 
+0200
++++ EMBOSS-6.3.1/ajax/graphics/ajgraph.c       2014-07-04 18:25:32.000000000 
+0200
+@@ -1329,8 +1329,8 @@
+ 
+ void ajGraphicsSetPenwidth(float penwidth)
+ {
+-    ajDebug("=g= plwid(%.2f) [width]\n", penwidth);
+-    plwid((PLINT)penwidth);
++    ajDebug("=g= plwidth(%.2f) [width]\n", penwidth);
++    plwidth((PLINT)penwidth);
+ 
+     return;
+ }