commit: 39d413c0adc6a8d96442cc9562c516c53021add8
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue May 1 22:13:29 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue May 1 22:13:29 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=39d413c0
sci-biology/jellyfish: version bump and a few tweaks
Install properly PDF documentation.
Use ${PV} in SRC_URI.
Update SRC_URI to reflect github hosting these days.
Package-Manager: Portage-2.3.31, Repoman-2.3.9
.../jellyfish/{jellyfish-1.1.11-r2.ebuild => jellyfish-1.1.12.ebuild} | 4 ++--
.../jellyfish/{jellyfish-2.2.9.ebuild => jellyfish-2.2.10.ebuild} | 0
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/jellyfish/jellyfish-1.1.11-r2.ebuild
b/sci-biology/jellyfish/jellyfish-1.1.12.ebuild
similarity index 91%
rename from sci-biology/jellyfish/jellyfish-1.1.11-r2.ebuild
rename to sci-biology/jellyfish/jellyfish-1.1.12.ebuild
index a9b0ce4d1..a22be5187 100644
--- a/sci-biology/jellyfish/jellyfish-1.1.11-r2.ebuild
+++ b/sci-biology/jellyfish/jellyfish-1.1.12.ebuild
@@ -7,8 +7,7 @@ inherit eutils flag-o-matic
DESCRIPTION="k-mer counter within reads for assemblies"
HOMEPAGE="http://www.cbcb.umd.edu/software/jellyfish";
-SRC_URI="http://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz
- http://www.cbcb.umd.edu/software/jellyfish/jellyfish-manual-1.1.pdf";
+SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz";
# older version is hidden in
trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11
# also was bundled in quorum-0.2.1 and MaSuRca-2.1.0
@@ -45,4 +44,5 @@ src_install(){
mv "${ED}"/usr/include/"${P}"/"${PN}"/*
"${ED}/usr/include/${PN}${SLOT}/" || die
rm -r "${ED}/usr/include/${P}" || die
mv "${ED}"/usr/share/man/man1/jellyfish.1
"${ED}"/usr/share/man/man1/jellyfish"${SLOT}".1 || die
+ newdoc doc/jellyfish.pdf jellyfish"${SLOT}".pdf
}
diff --git a/sci-biology/jellyfish/jellyfish-2.2.9.ebuild
b/sci-biology/jellyfish/jellyfish-2.2.10.ebuild
similarity index 100%
rename from sci-biology/jellyfish/jellyfish-2.2.9.ebuild
rename to sci-biology/jellyfish/jellyfish-2.2.10.ebuild
