commit: 8c25ca238bd0d2df7e204f6506d7258a6cdf1615 Author: Horea Christian <horea.christ <AT> yandex <DOT> com> AuthorDate: Wed May 23 00:24:36 2018 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Wed May 23 00:24:36 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8c25ca23
sci-libs/pybids: new package Package-Manager: Portage-2.3.38, Repoman-2.3.9 sci-libs/pybids/metadata.xml | 20 ++++++++++++++++++++ sci-libs/pybids/pybids-0.5.0.ebuild | 34 ++++++++++++++++++++++++++++++++++ sci-libs/pybids/pybids-9999.ebuild | 37 +++++++++++++++++++++++++++++++++++++ 3 files changed, 91 insertions(+) diff --git a/sci-libs/pybids/metadata.xml b/sci-libs/pybids/metadata.xml new file mode 100644 index 000000000..143b3ea21 --- /dev/null +++ b/sci-libs/pybids/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>horea.chr...@gmail.com</email> + <name>Horea Christian</name> + </maintainer> + <maintainer type="project"> + <email>s...@gentoo.org</email> + <name>Gentoo Science Project</name> + </maintainer> + <longdescription lang="en"> + PyBIDS is a Python library to centralize interactions with datasets + conforming BIDS (Brain Imaging Data Structure) format. For more + information about BIDS visit http://bids.neuroimaging.io. + </longdescription> + <upstream> + <remote-id type="github">INCF/pybids</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-libs/pybids/pybids-0.5.0.ebuild b/sci-libs/pybids/pybids-0.5.0.ebuild new file mode 100644 index 000000000..2a2ecf29e --- /dev/null +++ b/sci-libs/pybids/pybids-0.5.0.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit distutils-r1 + +DESCRIPTION="Python package to access BIDS datasets" +HOMEPAGE="https://github.com/INCF/pybids"; +SRC_URI="https://github.com/INCF/pybids/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + dev-python/setuptools[${PYTHON_USEDEP}] + " +RDEPEND=" + dev-python/grabbit[${PYTHON_USEDEP}] + dev-python/num2words[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/patsy[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + " + +# Tests are broken: https://github.com/INCF/pybids/issues/138 +RESTRICT="test" diff --git a/sci-libs/pybids/pybids-9999.ebuild b/sci-libs/pybids/pybids-9999.ebuild new file mode 100644 index 000000000..397820db4 --- /dev/null +++ b/sci-libs/pybids/pybids-9999.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit distutils-r1 git-r3 + +DESCRIPTION="Python package to access BIDS datasets" +HOMEPAGE="https://github.com/INCF/pybids"; +SRC_URI="" +EGIT_REPO_URI="https://github.com/INCF/pybids"; + +LICENSE="MIT" +SLOT="0" +KEYWORDS="" +IUSE="test" + +DEPEND=" + dev-python/setuptools[${PYTHON_USEDEP}] + test? ( dev-python/pytest[${PYTHON_USEDEP}] ) + " +RDEPEND=" + dev-python/grabbit[${PYTHON_USEDEP}] + dev-python/num2words[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/patsy[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + " + +python_test() { + py.test -v || die +}
