commit: f7eaea4317cca5c6ca5566c05c69b604d7312bc8 Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Oct 16 17:47:08 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Oct 16 17:47:08 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f7eaea43
sci-biology/SPAdes: version bump, drop old and buggy version SPAdes 3.13.0 CHANGE: Switched to multi-k-mer mode in rnaSPAdes, k-mer values are detected automatically based on read length. CHANGE: Added manual as README.md in markdown format for github. FIX: Updated BWA and switched to RopeBWT, which allows to handle large graphs. FIX: Assert for path.length() > 0 in rnaSPAdes. FIX: CQF and k-mer counting. REMOVE: dipSPAdes module. Package-Manager: Portage-2.3.51, Repoman-2.3.10 sci-biology/SPAdes/{SPAdes-3.12.0.ebuild => SPAdes-3.13.0.ebuild} | 1 - 1 file changed, 1 deletion(-) diff --git a/sci-biology/SPAdes/SPAdes-3.12.0.ebuild b/sci-biology/SPAdes/SPAdes-3.13.0.ebuild similarity index 96% rename from sci-biology/SPAdes/SPAdes-3.12.0.ebuild rename to sci-biology/SPAdes/SPAdes-3.13.0.ebuild index b56180a1a..00ccc4f27 100644 --- a/sci-biology/SPAdes/SPAdes-3.12.0.ebuild +++ b/sci-biology/SPAdes/SPAdes-3.13.0.ebuild @@ -12,7 +12,6 @@ HOMEPAGE="http://cab.spbu.ru/software/spades" SRC_URI=" https://github.com/ablab/spades/releases/download/v${PV}/${P}.tar.gz http://cab.spbu.ru/files/release${PV}/manual.html -> ${P}_manual.html - http://cab.spbu.ru/files/release${PV}/manual.md -> ${P}_manual.md http://cab.spbu.ru/files/release${PV}/rnaspades_manual.html -> ${P}_rnaspades_manual.html http://cab.spbu.ru/files/release${PV}/truspades_manual.html -> ${P}_truspades_manual.html http://spades.bioinf.spbau.ru/release3.11.1/dipspades_manual.html -> ${P}_dipspades_manual.html"