commit: e13c803fe9c9c8917720bf5d2e499bc2086c07b3 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sat Oct 27 12:32:32 2018 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sat Oct 27 12:32:32 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e13c803f
Drop broken package Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/gbench/gbench-2.11.7.ebuild | 89 --------------------------------- sci-biology/gbench/metadata.xml | 8 --- 2 files changed, 97 deletions(-) diff --git a/sci-biology/gbench/gbench-2.11.7.ebuild b/sci-biology/gbench/gbench-2.11.7.ebuild deleted file mode 100644 index 58631ce43..000000000 --- a/sci-biology/gbench/gbench-2.11.7.ebuild +++ /dev/null @@ -1,89 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit python-single-r1 wxwidgets - -DESCRIPTION="View and analyze genome sequences" -HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/"; -SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-"${PV}"/gbench-src-"${PV}".tgz"; - -LICENSE="public-domain" -SLOT="0" -KEYWORDS="" -#KEYWORDS="~amd64 ~x86" -IUSE="xml ssl sybase-ct zlib lzo pcre gnutls freetds mysql berkdb python opengl glut icu expat sqlite hdf5 jpeg png tiff gif xpm sybase threads fltk cgi" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - app-arch/bzip2 - app-text/sablotron - dev-cpp/muParser - dev-libs/boost:= - dev-libs/expat - dev-libs/icu - dev-libs/libxslt - lzo? ( dev-libs/lzo ) - dev-libs/xalan-c - dev-libs/xerces-c - dev-util/cppunit - media-libs/freetype - media-libs/giflib - media-libs/tiff:0= - || ( sci-biology/ncbi-tools++ sci-biology/sra_sdk ) - gnutls? ( net-libs/gnutls ) - hdf5? ( sci-libs/hdf5 ) - sys-fs/fuse:= - berkdb? ( >=sys-libs/db-4.3:* ) - glut? ( virtual/glu ) - opengl? ( virtual/opengl - media-libs/ftgl - media-libs/glew:= ) - x11-libs/fltk - >=x11-libs/gtk+-2:* - x11-libs/wxGTK:* - mysql? ( virtual/mysql ) - pcre? ( dev-libs/libpcre ) - sqlite? ( dev-db/sqlite:3= ) - ssl? ( dev-libs/openssl:0= ) - sybase-ct? ( dev-db/freetds ) - xml? ( dev-libs/libxml2:2= ) - xpm? ( - x11-libs/libXpm - virtual/jpeg:0= - media-libs/libpng:0= - sys-libs/zlib - ) -" -DEPEND="${RDEPEND}" - -# recycle ebuild logic from ncbi-tools++ - -S="${WORKDIR}"/gbench-src-"${PV}" - -src_configure(){ - # configure: error: --mandir=/usr/share/man: unknown option; use --help to show usage - # configure: error: --infodir=/usr/share/info: unknown option; use --help to show usage - # configure: error: --datadir=/usr/share: unknown option; use --help to show usage - # configure: error: --sysconfdir=/etc: unknown option; use --help to show usage - # configure: error: --localstatedir=/var/lib: unknown option; use --help to show usage - ./configure --prefix="${DESTDIR}"/"${EPREFIX}/usr" --libdir="${EPREFIX}/usr/$(get_libdir)" \ - --without-downloaded-vdb \ - CC="$(tc-getCC)" CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" || die -} - -# Doh, it runs git during configure phase if it could not find NCBI SRA VDB -# by executing ./scripts/common/add_vdb.sh which points to https://github.com/ncbi/ncbi-vdb -# But, we already have sci-biology/sra_sdk which blocks sci-biology/ncbi-tools++ -# as some files overlap. Seems ncbi-vdb is yet another smaller subset of either -# of the two? -# -# Same come checking out ncbi-vdb should be in ncbi-tools++-18.0.0 . -# -# That behavior is entirely optional; you can suppress it by -# configuring the Toolkit --without-downloaded-vdb, --with-vdb=PATH (e.g., -# --with-vdb=/usr), or --without-vdb altogether. diff --git a/sci-biology/gbench/metadata.xml b/sci-biology/gbench/metadata.xml deleted file mode 100644 index 8417d1580..000000000 --- a/sci-biology/gbench/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
