commit: 213fbaee602b48bf23d3de3f55691dc6ea9fea07 Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Nov 27 13:49:25 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Nov 27 13:59:03 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=213fbaee
sci-biology/seqtk: new package This package will be needed by sci-biology/tigmint Package-Manager: Portage-2.3.51, Repoman-2.3.11 Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz> sci-biology/seqtk/files/seqtk-1.3_Makefile.patch | 27 ++++++++++++++++++++++++ sci-biology/seqtk/metadata.xml | 12 +++++++++++ sci-biology/seqtk/seqtk-1.3.ebuild | 22 +++++++++++++++++++ 3 files changed, 61 insertions(+) diff --git a/sci-biology/seqtk/files/seqtk-1.3_Makefile.patch b/sci-biology/seqtk/files/seqtk-1.3_Makefile.patch new file mode 100644 index 000000000..bc0af18c5 --- /dev/null +++ b/sci-biology/seqtk/files/seqtk-1.3_Makefile.patch @@ -0,0 +1,27 @@ +diff --git a/Makefile b/Makefile +index 0a60ccc..1f3e429 100644 +--- a/Makefile ++++ b/Makefile +@@ -1,6 +1,9 @@ +-CC=gcc +-CFLAGS=-g -Wall -O2 -Wno-unused-function +-BINDIR=/usr/local/bin ++CC ?= gcc ++CFLAGS ?= -g -Wall -O2 -Wno-unused-function ++PREFIX ?= /usr/local ++BINDIR ?= $(DESTDIR)$(PREFIX)/bin ++INSTALL ?= install ++MKDIR ?= mkdir + + all:seqtk + +@@ -8,7 +11,8 @@ seqtk:seqtk.c khash.h kseq.h + $(CC) $(CFLAGS) seqtk.c -o $@ -lz -lm + + install:all +- install seqtk $(BINDIR) ++ $(MKDIR) -p $(BINDIR) ++ $(INSTALL) seqtk $(BINDIR) + + clean: + rm -fr gmon.out *.o ext/*.o a.out seqtk trimadap *~ *.a *.dSYM session* diff --git a/sci-biology/seqtk/metadata.xml b/sci-biology/seqtk/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/seqtk/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/seqtk/seqtk-1.3.ebuild b/sci-biology/seqtk/seqtk-1.3.ebuild new file mode 100644 index 000000000..2024de85d --- /dev/null +++ b/sci-biology/seqtk/seqtk-1.3.ebuild @@ -0,0 +1,22 @@ +# Copyright 2018 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Manipulate FASTA and FASTQ files" +HOMEPAGE="https://github.com/lh3/seqtk"; +SRC_URI="https://github.com/lh3/seqtk/archive/v1.3.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" +BDEPEND="" +PATCHES="${FILESDIR}"/"${P}"_Makefile.patch + +src_install(){ + emake install BINDIR="${ED}/usr/bin" +}
